Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g706 ATGGACGCGGTGGTGAAGGTGTTTTGCGTGCACACAGAACCGAATTTTTCGTTGCCGTGGCAAAGGAAGAGGCAGTACAGTTCGAGCAGTAGTGGGTTTGTGATTGGTGGGAGGAGGGTGTTAACGAATGCCCATTCTGTGGAGCATTATACCCAGGTGAAGCTCAAGAAACGGGGTTCTGATGTCAAGTATTTGGCCACTGTGCTTGCCATTGGGACTGAGTGCGATATTGCTATGCTAACGGTTAACGATGATGAGTTTTGGGAAGGCGTATCCCCTGTGGAGTTTGGGAATTTGCCTACACTACAAGATGCTGTGACTGTAGTGGGGTACCCAATTGGGGGAGACACGATTTCTGTAACAAGTGGTGTTGTATCAAGAATAGAGATCCTATCTTATGTTCATGGGTCCACTGAGCTTCTGGGTTTACAGATAGATGCTGCTATAAACTCTGGAAATTCTGGTGGGCCTGCCTTCAATGAGAAGGGCAATTGTGTGGGCATTGCATTTCAGTCTCTTAAACATGAAGATGCAGAGAATATAGGTTATGTCATACCAACACCAGTCATCAAGCACTTTATCCAAGATTATGAGAAGAATGGAGCATATACTGGATTCCCAATCCTATGCCTTGAGTGGCAGAAGATGGAAAATCCTGATTTGCGAATGGCAATGGGAATGAAACCTGATCAGAAGGGCGTTCGTGTTAGAAGAATTGATCCTACTGCCCCAGAATCTAAAGTTTTAAAGCCATCAGACATTATACTAAGTTTTGATGGTGTTGATATTGCTAATGATGGAACAGTTCCTTTCCGACATGGGGAACGCATTGGCTTTAGTTACCTTGTCTCCCAGAAATATACTGGAGATAATGCTACAATTACAGTTCTTCGCGATTCTAAGATGCTCAAATTTAATATCAAACTTGCAACTCACAGAAGGATTATTCCAGCACACAACAAGGGCAAACCTCCATCATATTACATTATTGCAGGATTTGTTTTTTCTACTGTATCTGTACCATATCTCCGTTCTGAGTATGGAAAGGATTATGAATATGAAGCTCCAGTCAAGCTTTTAGACAAACTCTTACATTCAATGCCCCAATCAGAAGATGAGCAACTTGTTGTGGTTTCTCAGGTGCTGGTTGCTGATATTAATATTGGGTATGAAGACATTGTTAACACACAGGTTCTTGCTCTCAATGGTAAGCCTGTGAAGAATCTGAAGAGCTTGGCCAACATGGTAGAGAGCTGTGATGACGAATTTTTGAAATTTGATCTAGAATACCAGCAGATAGTGGTCCTTAGAACAAAGACTGCCAAAGCAGCAACATTGGACATTCTTACAACACACTGCATACCTTCAAAAATGTCTGATGATCTTAAGACATGA 1395 42.22 MDAVVKVFCVHTEPNFSLPWQRKRQYSSSSSGFVIGGRRVLTNAHSVEHYTQVKLKKRGSDVKYLATVLAIGTECDIAMLTVNDDEFWEGVSPVEFGNLPTLQDAVTVVGYPIGGDTISVTSGVVSRIEILSYVHGSTELLGLQIDAAINSGNSGGPAFNEKGNCVGIAFQSLKHEDAENIGYVIPTPVIKHFIQDYEKNGAYTGFPILCLEWQKMENPDLRMAMGMKPDQKGVRVRRIDPTAPESKVLKPSDIILSFDGVDIANDGTVPFRHGERIGFSYLVSQKYTGDNATITVLRDSKMLKFNIKLATHRRIIPAHNKGKPPSYYIIAGFVFSTVSVPYLRSEYGKDYEYEAPVKLLDKLLHSMPQSEDEQLVVVSQVLVADINIGYEDIVNTQVLALNGKPVKNLKSLANMVESCDDEFLKFDLEYQQIVVLRTKTAKAATLDILTTHCIPSKMSDDLKT* 465
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 8873381 8880106 + Vvi17g706 Vvi17g706 779403

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g706 464 Pfam PDZ domain 227 309 IPR001478 GO:0005515
Vvi17g706 464 PANTHER - 1 464 - -
Vvi17g706 464 Pfam Trypsin-like peptidase domain 31 168 - -
Vvi17g706 464 Pfam PDZ domain 316 461 IPR041517 -
Vvi17g706 464 CDD PDZ_serine_protease 218 307 - -
Vvi17g706 464 Gene3D - 1 87 IPR043504 -
Vvi17g706 464 Gene3D - 206 314 IPR036034 GO:0005515
Vvi17g706 464 PANTHER PROTEASE DO-LIKE 9 1 464 - -
Vvi17g706 464 SUPERFAMILY Trypsin-like serine proteases 2 201 IPR009003 -
Vvi17g706 464 Gene3D - 88 199 IPR043504 -
Vvi17g706 464 Gene3D - 315 464 IPR046449 -
Vvi17g706 464 SUPERFAMILY PDZ domain-like 232 314 IPR036034 GO:0005515
Vvi17g706 464 PRINTS HtrA/DegQ protease family signature 32 44 IPR001940 GO:0004252|GO:0006508
Vvi17g706 464 PRINTS HtrA/DegQ protease family signature 60 80 IPR001940 GO:0004252|GO:0006508
Vvi17g706 464 PRINTS HtrA/DegQ protease family signature 102 126 IPR001940 GO:0004252|GO:0006508
Vvi17g706 464 PRINTS HtrA/DegQ protease family signature 139 156 IPR001940 GO:0004252|GO:0006508
Vvi17g706 464 PRINTS HtrA/DegQ protease family signature 248 260 IPR001940 GO:0004252|GO:0006508
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g706 K25897 DEGP9; protease Do-like 9 [EC:3.4.21.-] - vvi:100253563 929.472
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi14g1393 Vvi17g706 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g706 Blo04g00740 . . . . . . . Cmo13g00928 Cmo18g00119 . . . . . Cpe20g00227 . . . . . . . . . . . . . . . Cone2ag0889 Cone16ag0121 . . Lsi02g00353 Csa01g00829 Chy12g01288 Cme12g01714 . . . Bda14g00819 . Bpe15g00630 . . Sed08g2488 . . Cma13g00902 Cma18g00151 Car13g00742 Car18g00145 Cpe09g01042 . Bhi08g01579 Tan05g2035 Cmetu12g0872 Lac10g0425 Hepe07g2245 . . Cla01g01391 Cam01g1452 Cec01g1487 . Clacu01g1476 Cmu01g1371 Cre01g1286 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004589 2 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 2 2 1 1 2 1 2 42