Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g713 ATGACAAACATTTCACCTGGAAATGCAGGAAGAGGCTCGAATTGGGGTTGGAATATGAACTCAGACCCCTGCACTGACAAATGGGAGGGGGTGACATGTGACTCCCAGTCGAAATTTGTGAGGAAAGTAATTCTTGATGGACTCAATCTCGATGGAATTCTTGATGCAAAGTCTCTATGCAAAGTGAAAACACTTGCAGTATTGAGCCTGAACAACAACAGTGTTGTTGGAAAGTTATCCGAAGGGATATCAAGCTGCAAGCGATTGACCCACTTGTATGCAAGTGGAAACCATTTCTCAGGCGAGCTTCCCCAGAGTCTTTCCCGGTTGAGTAACTTGAAAAGGCTTCACATATCCAACAATAACTTCTCCGGCGTGCTGCCAGATTTGCCACGAATTTCAGGCTTAATATCATTCCTTGCTCAGAACAATCAACTCAGTGGGGAAATACCAAAATTTGATTTCTCCAACCTCCAGCAATTCAACGTCTCCAACAACAATTTCAGTGGTCCTATTCCAGATGTCGATGGACGTTTCTCTGCCAGCAGCTTCTCTGGTAATCCAGGATTATGTGGACCACCGCTTTCAAACACATGCCCACCATCTCTACCTTCTAAAAATGGATCAAAAGGTTTCTCCAGCAAGCAGCTTCTCACCTACTCAGGGTATATAATCCTTGGCCTGATTATTGTGCTCTTCCTTTTCTACAAATTGTTCAGAAAAAAGAGGCCGAAAGGTGAAAAGGTTGAGGTTATAAAGAAGGGAGTGAGCATGGAGTCTAGTAGCAACAAGCCCAGCAGTGTTTCCAGCCAGCTAAAAACCAGTGACAATAGATCGGAGTATTCAATAACATCTGCTGAAGCTGGAATGACTTCATCATCGCTTACAGTTCTTTCAAGTCCGGTGATAAATGGGTTGAGATTTGAGGATTTGCTCCGAGCTCCTGCTGAATTGATTGGGAGAGGAAAGCATGGAAGCCTCTACAAGGTTGTGCTGGAGAACAAGATGGTCTTGGCTGTGAAGAGGATCAAAGATTGGGGGATTTCTAGTCAGGATTTCAAGAGGAGAATGCAGAAGATAGATCAAGTGAAGCATCCAAATGTATTGCCTCCCCTCGCTTTTTATTGTTCCAAGCAGGAGAAGCTCCTTGTGTATGAATATCAGCAAAATGGCAGCCTCTTCAAGCTTCTCTATGGTAACTTCATTTCCACTATGTTCATTGTAGAATTTCATCACAGCTTACTTTCTGGAACCCAAAATGGCGAAGTATTTGAATGGGGAAGCAGACTAGGTGTTGCAGCTAGCATTGCTGAGGCATTGGCATTCATGTACAGTGAGCTCCATGACGATGGAATTGCTCATGGAAACCTAAAATCCACAAACATCTTGCTGGGAAAGGACATGGATCCATGTATCAGCGAATATGGGCTAATGAACATCAAAATCCAAAGAAACAGAGGAACTTTCCAACTTCCTTCTTGGTTGGGCATTAACAAACATCACTGCAACCAGGATAAACTGTCAGCCACTACAAGCATGAGGCTAAAAGTGGGCACAATCATCGGTTTAATGAGGCGCCATGCGCTGTACAGGGAAAGGAGAATGGGCCTACCATTAGGTTTTGTCTACCTCATGGATTTCTCTTCTGTCATCATATCTACGCGTCGGCAAACCTCTGGGTCTAATGCTTTCCAAAGACAACTGCAGCAACTCTTTCGCTTACATGACAGAGGTCTAGACCAAGCCTTCATAGATGCTCTACCTGTATTCACCTACAAGGATATTGTGGGCTTGAAAGAGCCATTTGATTGTGCAGTCTGTCTAAGTGAGTTTTCAGAAAATGATCAGCTGAGATTGCTTGTGATGTGTAGCCATGCTTTCCACATCAACTGCATAGACACGTGGCTCCTATCAAACTCTACATGTCCTCTATGTAGAGGGACTCTTTTAAGCTCTGGCCTTCCTCTTGAAAATCCGGTGCAGAATGGAGATGATCCCAGAGAAGCATCAAACACCCAGAGGAGGGTCTTCCCTGTGAGACTTGGTAAGTTTAGAAGCTTGAATAATGAAGGAACACAAAGTGGGGAGAGAGAACAAGAGGGGACTAGCAGCTCCTATTTGGATGCCAGAAGATGCTACTCAATGGGGCCATGCCAGTATGTGGTTGGCGACTCAAACCTTCAAGTGGCTTTGTCTCATGACAATGGTGCTAGCAGTGAGGAGAAGCATGCCAAAGCAAGAGACCAACATGGGAATTGTTCAACTGATCATGAGGATGCGGAAGGGAAGAAAATCAGCAGTAGGATCAGAGGTGAGAGTTTCTCAGTCTCCAAGATCTGGCTCTGGCCCAAGAAGAACAAGGTCCCAAGCTCTTCAGACCCCCATATGAGTCTTCCATTTGCCCCATAA 2409 44.79 MTNISPGNAGRGSNWGWNMNSDPCTDKWEGVTCDSQSKFVRKVILDGLNLDGILDAKSLCKVKTLAVLSLNNNSVVGKLSEGISSCKRLTHLYASGNHFSGELPQSLSRLSNLKRLHISNNNFSGVLPDLPRISGLISFLAQNNQLSGEIPKFDFSNLQQFNVSNNNFSGPIPDVDGRFSASSFSGNPGLCGPPLSNTCPPSLPSKNGSKGFSSKQLLTYSGYIILGLIIVLFLFYKLFRKKRPKGEKVEVIKKGVSMESSSNKPSSVSSQLKTSDNRSEYSITSAEAGMTSSSLTVLSSPVINGLRFEDLLRAPAELIGRGKHGSLYKVVLENKMVLAVKRIKDWGISSQDFKRRMQKIDQVKHPNVLPPLAFYCSKQEKLLVYEYQQNGSLFKLLYGNFISTMFIVEFHHSLLSGTQNGEVFEWGSRLGVAASIAEALAFMYSELHDDGIAHGNLKSTNILLGKDMDPCISEYGLMNIKIQRNRGTFQLPSWLGINKHHCNQDKLSATTSMRLKVGTIIGLMRRHALYRERRMGLPLGFVYLMDFSSVIISTRRQTSGSNAFQRQLQQLFRLHDRGLDQAFIDALPVFTYKDIVGLKEPFDCAVCLSEFSENDQLRLLVMCSHAFHINCIDTWLLSNSTCPLCRGTLLSSGLPLENPVQNGDDPREASNTQRRVFPVRLGKFRSLNNEGTQSGEREQEGTSSSYLDARRCYSMGPCQYVVGDSNLQVALSHDNGASSEEKHAKARDQHGNCSTDHEDAEGKKISSRIRGESFSVSKIWLWPKKNKVPSSSDPHMSLPFAP* 803
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 8971970 8977390 + Vvi17g713 Vvi17g713 779410

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g713 802 MobiDBLite consensus disorder prediction 734 766 - -
Vvi17g713 802 PANTHER LRR RECEPTOR-LIKE KINASE 1 484 - -
Vvi17g713 802 Gene3D Ribonuclease Inhibitor 148 196 IPR032675 -
Vvi17g713 802 SUPERFAMILY RING/U-box 583 650 - -
Vvi17g713 802 Pfam Ring finger domain 603 646 IPR001841 -
Vvi17g713 802 ProSiteProfiles Protein kinase domain profile. 313 628 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g713 802 SUPERFAMILY L domain-like 19 196 - -
Vvi17g713 802 Pfam Protein tyrosine and serine/threonine kinase 317 481 IPR001245 GO:0004672|GO:0006468
Vvi17g713 802 Gene3D Phosphorylase Kinase; domain 1 290 387 - -
Vvi17g713 802 SMART ring_2 604 645 IPR001841 -
Vvi17g713 802 SUPERFAMILY Protein kinase-like (PK-like) 317 483 IPR011009 -
Vvi17g713 802 ProSitePatterns Protein kinases ATP-binding region signature. 319 341 IPR017441 GO:0005524
Vvi17g713 802 Gene3D Transferase(Phosphotransferase) domain 1 389 520 - -
Vvi17g713 802 Gene3D Ribonuclease Inhibitor 6 147 IPR032675 -
Vvi17g713 802 CDD RING-H2_PA-TM-RING 603 646 - -
Vvi17g713 802 ProSiteProfiles Zinc finger RING-type profile. 604 646 IPR001841 -
Vvi17g713 802 PANTHER OS05G0588300 PROTEIN 1 484 - -
Vvi17g713 802 MobiDBLite consensus disorder prediction 736 766 - -
Vvi17g713 802 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 579 652 IPR013083 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g713 - - - vvi:100255249 868.996
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g713 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone2ag0138 Cone16ag0916 Lsi02g00357 Csa01g00833 Chy12g01285 Cme12g01710 . . . . . . . . Sed08g2492 . . . Cma18g00156 . Car18g00149 Cpe09g01038 . Bhi08g01585 Tan05g2030 Cmetu12g1860 Lac10g0429 Hepe07g2243 . . Cla01g01388 Cam01g1447 Cec01g1483 . Clacu01g1470 Cmu01g1365 Cre01g1282 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001459 3 3 1 5 3 2 2 2 2 2 2 2 3 2 2 3 2 5 2 2 2 2 2 2 2 2 2 5 3 1 73
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76326 PF07714 PK_Tyr_Ser-Thr 6.60E-14 CL0016 Vvi PK