Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g717 ATGGTGTCAAGATCATCATATACAAGTTTCTTGGATGCGGCATCTGGGGACCTGTTGAATTTCCCTCAAACACCTAGAACCCTCCCAAGGGTGATGACAGTTCCAGGAATTATTTCTGATGTGGCAAATTTTCTTCCTCTGCTTGCTCAAAAAGATTTAAACACCGGCAGATGGTGCTTCAGTTTTGATGAAGATGCGCTTTTGTTACAAATGAAGGATGGTTTCTCATCTGAAACTGATGTTGTTTATGTGGGATCTCTGAAGGTTGATGTAGATACCAGTGAGCAAGAAGAAGTTGCTGAGAGACTACTAGCAGAATTTAATTGTGTGCCTACTTTTCTTCCTCCTGACCTTCAGAAAAAGTTTTATCATGGGTTCTGCAAACAATATCTGTGGCCTCTCTTCCATTATATGCTCCCCATAAAGCGCTTCTATCGAGTTAAGCTTGGATTCTTCCTCCACAGTCCATTCCCCTCATCAGAAATCTACCGAACTCTGCCAGTCAGAGATGATATTCTAAAAGCATTGCTGAATGCAGACTTAGTTGGTTTTCATACATTTGATTATGCTCGCCACTTTTTGTCTTGTTGCAGTAGAATGCTAGGCCTGAACTATGAATCCAAGAGAGGTCACATTGGACTTGAGTATTTTGGCCGCACGGTTTATGTCAAAATTTTGCCTGTGGGAATTCATATGGGCCAACTTGAATCCGCACTAAATCTCCCCTCTACATCCATCAAGGTCAAAGAAATCCAAGAACAATTCAAGGGAAAAAAGATTATTCTGGGTGTTGATGATATGGACATATTTAAAGGACTAAGTCTAAAATTACTAGCCATGGAACACCTTCTGCAGCATTATGAAGAGTTGCGGGGTGAACTAGTCTTGGTTCAAATTGTAAATCCTGCAAGGAGCACAGGTAAAGATGTTCAGGAAGCAAAAAGGGAGACATATGCTATTACCGAAAGGATAAATGCAAATTTTGGTTTTCCAGGCTATGAACCGGTGGTCCTGATTGATCATCCTGTGCCTTTCTATGAGAAGACTGCCTATTATGCTTTGGCTGAATGTTGCATAGTAAATGCTGTGAGGGATGGAATGAACTTAATGCCATACAATTACATAGTTTGCAGGCAGGGGACTCCAAAAATAGATGAAGCTTTGGGAATTACCTCTGGGTCCTCTCGTACTAGTACACTTGTTGTCTCAGAATTCATAGGTTGCTCACCGTCACTTAGTGGTGCAATAAGACACTATCGTTTCAGAATTGTTGCTCTTTCTCCCAATTTTAGGAAACTTTCCCTTGACCATATTGTCAAAGCATATAAGAGGGCGAATAGAAGGGCGATATTTTTGGATTATGATGGAACAGTGGTTCCGCAATCTTCCATTGTTAAAACTCCTAGCCCTGAGGTTATCTCTATTCTAAATGACCTTTGCAATGACCCTAAGAACACTGTGTTTATTGTTAGTGGCAGGGGGAAAAACTCTCTGAGTGACTGGTTCGCTCAATGTCAGAATTTGGGAATAGCAGCTGAGCATGGATACTTCATTAGGTGGAGTCAGAGTTCCAATTGGGAATCAAGACCTTTACTCATGGACTTTGACTGGAAAAGAATTGCAGATCCTGTAATGCAATTATATACTGAGGCAACTGATGGCTCCTACATAGAGACTAAGGAGAGTGCCTTGGTATGGCACCACCAAGATGCTGACCCTGATTTTGGATCCTGCCAGGCAATGGAGTTGCTGGATCATCTTGAGAATGTTCTTGCAAATGAACCTGTGGAAGTTAAGAGGGGCCATCATATTGTTGAGGTTAAGCCACAGGGAGTCAGTAAAGGTCAGGTTACAGAGAAAATTCTTTCCACAATGATCAGTGATGGGAAACCACCAGATTTTGTGATGTGCATTGGGGACGATAGGTCAGATGAGGACATGTTTGAGAGCATATCAAGCACCATTTATAGTCCATCACTGCCTGCACCCCCAGAGATCTTTGCATGCACGGTCGGCCAAAAACCAAGCAAAGCTAGGTACTACCTTGATGATTCTGCAGATGTTTTGAAACTGCTCCAGGGCCTGGCCAGAGCTTCTAGTATGAAGCCCAAGTGTAGCACACAAATACAGTTCTCCTTTGAAAGTGTTGCTTGA 2154 42.29 MVSRSSYTSFLDAASGDLLNFPQTPRTLPRVMTVPGIISDVANFLPLLAQKDLNTGRWCFSFDEDALLLQMKDGFSSETDVVYVGSLKVDVDTSEQEEVAERLLAEFNCVPTFLPPDLQKKFYHGFCKQYLWPLFHYMLPIKRFYRVKLGFFLHSPFPSSEIYRTLPVRDDILKALLNADLVGFHTFDYARHFLSCCSRMLGLNYESKRGHIGLEYFGRTVYVKILPVGIHMGQLESALNLPSTSIKVKEIQEQFKGKKIILGVDDMDIFKGLSLKLLAMEHLLQHYEELRGELVLVQIVNPARSTGKDVQEAKRETYAITERINANFGFPGYEPVVLIDHPVPFYEKTAYYALAECCIVNAVRDGMNLMPYNYIVCRQGTPKIDEALGITSGSSRTSTLVVSEFIGCSPSLSGAIRHYRFRIVALSPNFRKLSLDHIVKAYKRANRRAIFLDYDGTVVPQSSIVKTPSPEVISILNDLCNDPKNTVFIVSGRGKNSLSDWFAQCQNLGIAAEHGYFIRWSQSSNWESRPLLMDFDWKRIADPVMQLYTEATDGSYIETKESALVWHHQDADPDFGSCQAMELLDHLENVLANEPVEVKRGHHIVEVKPQGVSKGQVTEKILSTMISDGKPPDFVMCIGDDRSDEDMFESISSTIYSPSLPAPPEIFACTVGQKPSKARYYLDDSADVLKLLQGLARASSMKPKCSTQIQFSFESVA* 718
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 8992842 8998935 - Vvi17g717 Vvi17g717 779414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g717 717 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 142 417 IPR001830 GO:0003824|GO:0005992
Vvi17g717 717 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 1 141 IPR001830 GO:0003824|GO:0005992
Vvi17g717 717 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 420 708 IPR001830 GO:0003824|GO:0005992
Vvi17g717 717 Pfam Trehalose-phosphatase 451 685 IPR003337 GO:0003824|GO:0005992
Vvi17g717 717 CDD HAD_TPP 449 690 - -
Vvi17g717 717 Gene3D Glycogen Phosphorylase B; 142 236 - -
Vvi17g717 717 Gene3D - 447 561 IPR023214 -
Vvi17g717 717 Gene3D - 577 710 IPR023214 -
Vvi17g717 717 Gene3D Glycogen Phosphorylase B; 237 445 - -
Vvi17g717 717 PANTHER ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)-RELATED 142 417 - -
Vvi17g717 717 PANTHER ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)-RELATED 1 141 - -
Vvi17g717 717 PANTHER ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)-RELATED 420 708 - -
Vvi17g717 717 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 449 650 IPR006379 -
Vvi17g717 717 CDD GT20_TPS 41 417 IPR001830 GO:0003824|GO:0005992
Vvi17g717 717 SUPERFAMILY HAD-like 448 696 IPR036412 -
Vvi17g717 717 Gene3D Glycogen Phosphorylase B; 37 141 - -
Vvi17g717 717 TIGRFAM T6PP: trehalose-phosphatase 445 696 IPR003337 GO:0003824|GO:0005992
Vvi17g717 717 Pfam Glycosyltransferase family 20 41 140 IPR001830 GO:0003824|GO:0005992
Vvi17g717 717 Pfam Glycosyltransferase family 20 142 416 IPR001830 GO:0003824|GO:0005992
Vvi17g717 717 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 41 420 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi1g745 Vvi17g717 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g717 K16055 - vvi:100251811 1291.17