Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g72 ATGGAGAGCACACCGGACCCGAGTTCAAAACTGACTCGCCACGACGAACCAGAGCTCGACCTCTACACCATCCCAATCCATTCAAGTTGGTTCTCTTGGGACGAAATCCACGAAAAAGAGAAGATCTCCCTCAAAGAGTTCTTCGATGGAAGTTCAATCTCGAGAACACCGAAGATATACAAAGAGTACAGAGACTTCATCATCTCTAAGTACAGAGAAGACCCGTCGAGGAGGCTTACCTTCGCGGAGATTCGTAAATCACTGGTGGGTGACGTTAGTTTGCTCCACAAGGTCTTTCTCTTCTTGGAGAGGTGGGGGTTGATCAATTTCGGTGCACCTGGGGGTGAGGATTCGGCGGCGGTGGCGGAGGGTGCCGAGAGGCACAGAGTGAGGTCCGAGGATGGAGCTCCGAATGGAATTCGGGTCGTGGCAATGCCCAATTCGTTGAAGCCCATCACAATGCCGCTGACTTTGGATGTGAATGGTGAAGTGGATGAGAATGGATTTAGATTGCCGCCATTGGCTTCCTATTCGGATGTTTTCAGTGATTTGACTAAGGAGAAAGGATTGGTTTGTGGGAACTGCGGGGATAATTGTGATTCCGGACATTACAACTGCTTGAAGGGGAGTCCTGTAATTTGTGTGAAATGCTTCAAGAATGGAAATTACGGGGAGAACCGATCTGTTGATGATTTCAAGTTTAATGATTGCAATGAAAACAGAGGCAATCGAGGAGCTGTTTGGACTGAGGCAGAAACTTTACTTCTTTTGGAATCAGTTTTAAAGCATGGAGACGACTGGGAGCTTGTTGTTCAAAATGTTCAAACCAAGACAAAACTTGATTGTATTTCAAAGCTCATAGAGCTGCCATTTGGGGAGCTTATGTTGGGTTCTTCCCTAGGTAAATCTAGGGCCAGCAATGACAATACAAGCAGTATCAAACCAGTTCAGACTTCATTAGAGTCCCAAGAGAATATAAAAAATGGGGGTCAAGGAGATGAGCAGATAAATGAGAGTGAGCAAAATGGAGACGCTGAGAACCAAGGCCCTCCTTTGAAGCGAAAATGCATTACTTCACTTTCTGATGCTGGCATCTCACTGATGAGACAGGTAGCTGTCATCTCAACCATGGTTGGCCCACATATCTCAGCTGCTGCGGCTGATGCTGCTGTTGCAGCACTCTGTGATGAAAACCCATGTGTGAAGGATATTTTTGATGGTGCAGAGGATAATGTAACAGAAGAGTTAGGCTCCCCCATTCGGAATAACAAGCTGGAGAGATCACTTATGGTTGAAGATTCAGAGATAAATGAAAGGCCCATTCTATCAGAAATTCAGAAGACATCCTCTGAGAAGAATGCCATACCTCTACCTTTGCAAATGAGGGCTGCAATTGCAACAGCCCTTGGAGCAGCTGCTGCGAATGCCAAATCATTGGCAGATCAGGAGCACAGAGAGATAGAACATTTAGTGGCAACCATAATTGAAACACAGATGAAGAAACTTCACTGCAAAATCCAGCATTTTGAAGACTTGGAGCTGATAATGGAGAAGGAATACACCCACCTAAAGGAACTGAAAGAGTCTATCATAGCAGAGCGGATTGATATCTTGCAAAGGGTATTTAATGCTGGAATATCTAGATGGAGGGATCCTATTTCTGTAAAATCTCATACTGGTAGTGTATCTTGA 1692 45.15 MESTPDPSSKLTRHDEPELDLYTIPIHSSWFSWDEIHEKEKISLKEFFDGSSISRTPKIYKEYRDFIISKYREDPSRRLTFAEIRKSLVGDVSLLHKVFLFLERWGLINFGAPGGEDSAAVAEGAERHRVRSEDGAPNGIRVVAMPNSLKPITMPLTLDVNGEVDENGFRLPPLASYSDVFSDLTKEKGLVCGNCGDNCDSGHYNCLKGSPVICVKCFKNGNYGENRSVDDFKFNDCNENRGNRGAVWTEAETLLLLESVLKHGDDWELVVQNVQTKTKLDCISKLIELPFGELMLGSSLGKSRASNDNTSSIKPVQTSLESQENIKNGGQGDEQINESEQNGDAENQGPPLKRKCITSLSDAGISLMRQVAVISTMVGPHISAAAADAAVAALCDENPCVKDIFDGAEDNVTEELGSPIRNNKLERSLMVEDSEINERPILSEIQKTSSEKNAIPLPLQMRAAIATALGAAAANAKSLADQEHREIEHLVATIIETQMKKLHCKIQHFEDLELIMEKEYTHLKELKESIIAERIDILQRVFNAGISRWRDPISVKSHTGSVS* 564
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 717751 722776 + Vvi17g72 Vvi17g72 778769

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g72 563 CDD SANT 248 285 IPR001005 -
Vvi17g72 563 PANTHER SWI/SNF COMPLEX-RELATED 19 552 - -
Vvi17g72 563 Gene3D - 244 292 - -
Vvi17g72 563 Pfam Myb-like DNA-binding domain 248 286 IPR001005 -
Vvi17g72 563 SMART sant 244 292 IPR001005 -
Vvi17g72 563 Pfam SWIRM-associated region 1 467 542 IPR032451 -
Vvi17g72 563 SUPERFAMILY Homeodomain-like 244 293 IPR009057 -
Vvi17g72 563 MobiDBLite consensus disorder prediction 302 354 - -
Vvi17g72 563 SUPERFAMILY Homeodomain-like 21 112 IPR009057 -
Vvi17g72 563 Pfam SWIRM domain 26 110 IPR007526 GO:0005515
Vvi17g72 563 ProSiteProfiles SANT domain profile. 243 294 IPR017884 -
Vvi17g72 563 ProSiteProfiles SWIRM domain profile. 22 119 IPR007526 GO:0005515
Vvi17g72 563 MobiDBLite consensus disorder prediction 302 346 - -
Vvi17g72 563 Gene3D - 28 113 IPR036388 -
Vvi17g72 563 PANTHER BRAHMA ASSOCIATED PROTEIN 155 KDA 19 552 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g72 K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C - vvi:100250960 1105.12
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g72 . . . Bda15g00681 Bpe12g00472 . . . . . Cma10g00047 . Car10g00036 . Sed01g2393 . . Bhi02g00661 Tan09g2396 Cmetu07g1239 . . . . Cla06g01758 Cam06g1950 Cec06g1999 Cco06g2005 Clacu06g1907 Cmu06g1847 Cre06g2661 . . . Cone19ag0221 . . . . . . . . . . . Bma08g00266 . Cmo10g00042 . . . . . . Cpe18g00918 . . . . . . . . . . . . . . Lsi06g01656 Csa01g00039 Chy02g02680 Cme02g02083
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009523 2 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 33