Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g720 ATGAGTGGGCCCATGGTCCAAAATCTTGACTTTATAATTGATTTCGCTGCAACACTGCCTCTCCCCCCAGGTGAGCCTTGTTTCTGTGACATACCAAACGAGAATTTTCATGATTCATTACATCCATCCTCACTCCCACTCCCTCTTCCAACCCTACTTTTTGTTTCTAAAACTCAACCTTTGATCTTACTCAATCCTGGAGTTTTTGTGACTTATATTTGTTATTTTGCACTCTTATCCATTGCTAATTTAATTTTTCGATTTATGAGAATCAAATCAATTAGCTTAATTTGCAAGGAATATTTTAATATTTTTATCTATCTACAAAACATGGGAATTAGACTTGAAGAATGGAGAGTAAGAAGAGATATAGAGGAGCATCTTTGTCTGGCCCTTGTCCATTGTGTTCCTTTCTTCTCACAAATGGATGATCAGCTCTTAGATGCCATATGCGAACGTCTCGTGTCATCCTTAAGCACTCAAGATGCATATATTGTTCGGGAGGGTGATCCAGTGAATGAGATGCTTTTCATCATTAGAGGCCAACGAGAGAGCTCAACGGCCAATGGGGGTCAATCAAGTTTCTTCAACTCCATCACTCTCAGGCCTGGTGACTTCTGTGGGAAGGAGTTGTTGACTTGGGCCTTAATGCCCACTTCAAGCCTGAATCTACCATCCTCAACTCGAACCATGAAGATGATTACCAAAGTCGAAGCATTTGCACTTCGAGCTGAAGACCTCAAGTTCGTGGGGAATCAGTTTAAACGCTTCCATAGCAAGAAACTTCAGCATGCTTTCAGGTACTATTCCCACCAGTCGAGGACATGGGGAGCTTGCTTTATACAAGTTGCATGGAGAAGGCTTAAAAGGTGA 873 41.58 MSGPMVQNLDFIIDFAATLPLPPGEPCFCDIPNENFHDSLHPSSLPLPLPTLLFVSKTQPLILLNPGVFVTYICYFALLSIANLIFRFMRIKSISLICKEYFNIFIYLQNMGIRLEEWRVRRDIEEHLCLALVHCVPFFSQMDDQLLDAICERLVSSLSTQDAYIVREGDPVNEMLFIIRGQRESSTANGGQSSFFNSITLRPGDFCGKELLTWALMPTSSLNLPSSTRTMKMITKVEAFALRAEDLKFVGNQFKRFHSKKLQHAFRYYSHQSRTWGACFIQVAWRRLKR* 291
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 9017131 9026798 + Vvi17g720 Vvi17g720 779417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g720 290 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 120 290 - -
Vvi17g720 290 CDD CAP_ED 138 269 IPR000595 -
Vvi17g720 290 SMART cnmp_10 138 269 IPR000595 -
Vvi17g720 290 ProSiteProfiles cAMP/cGMP binding motif profile. 138 221 IPR000595 -
Vvi17g720 290 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 16-RELATED 120 290 - -
Vvi17g720 290 Gene3D Jelly Rolls 136 256 IPR014710 -
Vvi17g720 290 SUPERFAMILY cAMP-binding domain-like 127 255 IPR018490 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g720 K05391 - vvi:100253469 317.775