Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g721 ATGAATAATAACATCCGCCCCTTCTCCTTTCGCCAGAAGTCCTGGTGGACCCAAATCCTCGACCCCGGTGGCCGTCTTGTCACTCAATGGAACCACATTTTCCTCATCTCCTGTTTGCTAGCTCTCTTTTTGGATCCTCTCTATTTCTATCTTCCGGTGATCGACGGCCCGGCCTGTTTTCGGATCGACCTGGGTTTGGGGATTGTCGTCACGTTTTTTCGGACGGTGGCTGATATGTTCTACCTGACCCATATGATCATGAAGTTTCGGATGGCTTTTGTGGCTCCCAGCTCTCGGGTTTTTGGGAGGGGAGAGCTTGTGATGGATCCGCAGCAGATTGCGCTGCGGTACTTGAAGTCTGACTTTATAATTGATTTCGCTGCAACACTGCCTCTCCCCCAGACGGTCATCTGGTACATAATTCCAGCAGTGAAAGACCCTATAACTGATCATGCTAATCATATTCTTTCATTGATTGTTCTCATTCAATATATTCCTCGATTGTTTCTCATTTTTCCTCTGTACCGGCGGATTGTTAAAATTACTGGGGTTGTGGCAAGAACTGCTTGGCTAGGGGCAGCATACAATCTTCTTCTCTATATGTTAGCAAGTCATGTTTTAGGAGCTTCATGGTATTTGTTATCCATTGAGCGGCAGCACTCATGCTGGAGCAAAGAATGTCAGAAGGAGGCAAATTCCATGCATTTCCCAACTTGTCATTCTTCATTTCTTGATTGTAGCACTTTGGAGCAGCCTGACCGCCGAGTTTGGCTGAACTTCAGTCATGTGCTCACCAATTGTCGTCCTGAAAATAGTATTGGGTTTGAGTATGGCATGTATTCTGATGCTTTTATTAATGAAGTTGCTTCCTCAACTTTCCTTGAGAAATACTTTTACTGCTTTTGGTGGGGTTTGAAGGGTCTAAGCTCGTATGGACAGAGTGTGGTGACAAGTACTTTCACTAGTGAAACATTATTTTGCATTGTTATTTGCATTGGGGGTCTAGTTCTATTCTCACATCTCATAGGCAACATGCAGACCTATCTACAAAACATGGGAATTAGACTTGAAGAATGGAGAATAAGAAGAAGAGATACAGAGGAGTGGATGAGGCATCGTCAACTGCCTCTAGATTTGCAAGAGCGTGTTCGCCGTTTTGTTCAATATAAATGGATTGCCACAAGAGGAGTAGATGAAGAAGCCATTTTGCGTGCCTTACCTTTGGACATCCGTCGTGAAATTCAAAGGCATCTTTGTTTGGCCCTTGTCCGCCGTGTTCCTTTCTTCTCACAAATGGATGATCAGCTCTTAGATGCCATATGTGAACGTCTTGTGTCATCCTTAAGCACTCAAGATGCATATATTGTTCGGGAAGGTGATCCAGTGAATGAGATGTTTTTCATCATTAGGGGCCAACTAGAGAGCTCAACGACTAATGGGGGTCGGTCAGGTTTCTTCAACTCCATCACTCTCAGGCCTGGTGACTTCTGTGGGGAAGAGTTGTTGACTTGGGCCTTAATGCCCACTTCAAGCCTAAACCTACCATCCTCAACTCGAACCGTCAGGTCCACTACCAAAGTCGAAGCATTTGCACTTCGAGCTGAAGACCTCAAGTTTGTGGCAAACCAGTTTAAACGCCTCCACAGCAAGAAACTTCAGCATGCTTTCAGGTACTATTCCCATCAGTGGAGGACCTGGGGAGCTTGCTTTATACAAGTTGCATGGAGAAGGCTTAAAAGGAGAAAGCTGGCAAAGGAGTTGGCCAGACAAGAGAGCCTTGCTGAGATCTCATCAATGGAAAATTCACATGGGGGCCAGCAAATTGGAGCCACAGTTTTAGCTTCAAGCTTGAAGATGCCCAAACTGTTTAAGCCGGAGGAGCCTGATTTCTCCTCAGACCATGAAAATAGTTGA 1914 45.3 MNNNIRPFSFRQKSWWTQILDPGGRLVTQWNHIFLISCLLALFLDPLYFYLPVIDGPACFRIDLGLGIVVTFFRTVADMFYLTHMIMKFRMAFVAPSSRVFGRGELVMDPQQIALRYLKSDFIIDFAATLPLPQTVIWYIIPAVKDPITDHANHILSLIVLIQYIPRLFLIFPLYRRIVKITGVVARTAWLGAAYNLLLYMLASHVLGASWYLLSIERQHSCWSKECQKEANSMHFPTCHSSFLDCSTLEQPDRRVWLNFSHVLTNCRPENSIGFEYGMYSDAFINEVASSTFLEKYFYCFWWGLKGLSSYGQSVVTSTFTSETLFCIVICIGGLVLFSHLIGNMQTYLQNMGIRLEEWRIRRRDTEEWMRHRQLPLDLQERVRRFVQYKWIATRGVDEEAILRALPLDIRREIQRHLCLALVRRVPFFSQMDDQLLDAICERLVSSLSTQDAYIVREGDPVNEMFFIIRGQLESSTTNGGRSGFFNSITLRPGDFCGEELLTWALMPTSSLNLPSSTRTVRSTTKVEAFALRAEDLKFVANQFKRLHSKKLQHAFRYYSHQWRTWGACFIQVAWRRLKRRKLAKELARQESLAEISSMENSHGGQQIGATVLASSLKMPKLFKPEEPDFSSDHENS* 638
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 9032364 9039270 + Vvi17g721 Vvi17g721 779418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g721 637 Pfam Cyclic nucleotide-binding domain 452 539 IPR000595 -
Vvi17g721 637 Gene3D Helix hairpin bin 356 419 - -
Vvi17g721 637 SUPERFAMILY Voltage-gated potassium channels 22 351 - -
Vvi17g721 637 SMART cnmp_10 428 559 IPR000595 -
Vvi17g721 637 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 16-RELATED 6 600 - -
Vvi17g721 637 CDD CAP_ED 428 559 IPR000595 -
Vvi17g721 637 Gene3D - 57 353 - -
Vvi17g721 637 Pfam Ion transport protein 30 352 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vvi17g721 637 SUPERFAMILY cAMP-binding domain-like 358 553 IPR018490 -
Vvi17g721 637 Gene3D Jelly Rolls 426 546 IPR014710 -
Vvi17g721 637 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 6 600 - -
Vvi17g721 637 ProSiteProfiles cAMP/cGMP binding motif profile. 428 558 IPR000595 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi14g1386 Vvi17g721 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g721 K05391 - vvi:100253469 1265.37