Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g723 ATGTTCCATGGATGCAACAAAACAAAGGACTCGTATTCATATTCTAATTTGTTAAATGGAGCGGGATCTTTAAAAGCGATTCTTGACGTCCCCAGTAGTTACGAGTTCGTCCTCCGTTTGGCAGCTGAGAAAACAAGCCCGAGGAAGGTTTTGGTGAGGTTCGAAATGGCAACGGAACCTAAGGCAGCGGCTGAGAATGTGAAAATTGACCTATTCGAAGATGATGATGAGTTTGAAATCAATGAAGAGTGGGAGGATAGGGCTGAAGAAAAAGTAGCAGAGCAATGGGAAGATGATTGGGACGATGATGATGTCCATGATGATTTTTCTCAGCAGTTAAGGAAGGAACTGGAGAATAACATCAAGAAAAGCTAA 375 42.4 MFHGCNKTKDSYSYSNLLNGAGSLKAILDVPSSYEFVLRLAAEKTSPRKVLVRFEMATEPKAAAENVKIDLFEDDDEFEINEEWEDRAEEKVAEQWEDDWDDDDVHDDFSQQLRKELENNIKKS* 125
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 9093026 9096725 + Vvi17g723 Vvi17g723 779420

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g723 124 SMART DSS1_SEM1_2 64 119 IPR007834 GO:0006406|GO:0008541|GO:0043248
Vvi17g723 124 Pfam DSS1/SEM1 family 65 119 IPR007834 GO:0006406|GO:0008541|GO:0043248
Vvi17g723 124 PANTHER OS01G0316800 PROTEIN 53 123 - -
Vvi17g723 124 PANTHER 26 PROTEASOME COMPLEX SUBUNIT DSS1 53 123 IPR007834 GO:0006406|GO:0008541|GO:0043248
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g723 K10881 SHFM1, DSS1, RPN15; 26 proteasome complex subunit DSS1 - vvi:100267214 111.694
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g723 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .