Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g728 ATGGACAAGAACAAGAAGAAAGAGGATGACTCCTCCTCCGCCGCCGCCGCCATCCCCACCCTCGCCCCCTCCACCACCGCCTCCACCACCGCCCCCACCACCGCCCGACAAGACTGGGAGATCGACCCCTCTAAGCTCATCATCAAGACCGTCATTGCTCGTGGCACTTTCGGCACTGTCCACCGTGGCGTTTACGACGGCCAAGATGTTGCCGTTAAACTGCTTGATTGGGGGGAAGAGGGTCACAGGACAGAAGCTGAAATTGCTTCACTGAGGGCGGCTTTTACGCAAGAGGTAGCCGTGTGGCATAAGCTTGACCATCCTAATGTAACAAAGTTTATAGGGGCGACGATGGGCTCAGCGGAGCTAAACATACAAACGGAGAATGGTCATATAGGCATGCCAAGTAATATTTGTTGTGTTGTTGTGGAGTATCTTCCAGGGGGTGCCCTGAAATCTTATCTCATAAAGAACCGAAGAAGAAAGTTGGCTTTCAAAGTTGTCATTCAGCTGGCACTTGATCTTGCAAGAGGGTTGAGTTACCTTCACTCTCAGAAGATTGTTCACAGAGATGTAAAGACAGAGAACATGCTATTGGACAAGACTCGAACTGTAAAGATAGCTGATTTTGGAGTTGCTCGGGTTGAGGCTTCAAATCCTAATGACATGACTGGGGAGACTGGGACCCTTGGTTACATGGCTCCAGAGGTCTTAAATGGAAGCCCATATAACAGGAAATGTGATGTGTATAGTTTTGGTATCTGTTTGTGGGAGATATATTGCTGTGACATGCCATATCCTGACCTCAGTTTCTCAGAAGTGACTTCAGCTGTGGTTCGCCAGAATCTGAGGCCAGAGATACCAAGGTGTTGCCCTAATTCTTTGGCAAATGTAATGAAGCGATGCTGGGATGCTAACCCTGACAAACGACCAGAGATGGATGAGGTGGTTGCTATGATAGAAGCCATTGATACATCAAGAGGAGGAGGTATGCTTCCTGTTGATCAGCCTCAGGGCTGTTTTTGTTTCCGCAAGTATCGAGGTCCTTGA 1050 48.86 MDKNKKKEDDSSSAAAAIPTLAPSTTASTTAPTTARQDWEIDPSKLIIKTVIARGTFGTVHRGVYDGQDVAVKLLDWGEEGHRTEAEIASLRAAFTQEVAVWHKLDHPNVTKFIGATMGSAELNIQTENGHIGMPSNICCVVVEYLPGGALKSYLIKNRRRKLAFKVVIQLALDLARGLSYLHSQKIVHRDVKTENMLLDKTRTVKIADFGVARVEASNPNDMTGETGTLGYMAPEVLNGSPYNRKCDVYSFGICLWEIYCCDMPYPDLSFSEVTSAVVRQNLRPEIPRCCPNSLANVMKRCWDANPDKRPEMDEVVAMIEAIDTSRGGGMLPVDQPQGCFCFRKYRGP* 350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 9166427 9172256 - Vvi17g728 Vvi17g728 779425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g728 349 SUPERFAMILY Protein kinase-like (PK-like) 20 319 IPR011009 -
Vvi17g728 349 MobiDBLite consensus disorder prediction 17 36 - -
Vvi17g728 349 ProSitePatterns Serine/Threonine protein kinases active-site signature. 187 199 IPR008271 GO:0004672|GO:0006468
Vvi17g728 349 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 3 343 - -
Vvi17g728 349 SMART serkin_6 46 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g728 349 ProSiteProfiles Protein kinase domain profile. 46 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g728 349 Gene3D Transferase(Phosphotransferase) domain 1 146 331 - -
Vvi17g728 349 MobiDBLite consensus disorder prediction 1 36 - -
Vvi17g728 349 Gene3D Phosphorylase Kinase; domain 1 34 129 - -
Vvi17g728 349 CDD STKc_MAP3K-like 52 320 - -
Vvi17g728 349 Pfam Protein tyrosine and serine/threonine kinase 48 318 IPR001245 GO:0004672|GO:0006468
Vvi17g728 349 PANTHER SERINE/THREONINE-PROTEIN KINASE STY8-LIKE 3 343 - -
Vvi17g728 349 PIRSF ILK 16 328 - -
Vvi17g728 349 PRINTS Tyrosine kinase catalytic domain signature 143 156 IPR001245 GO:0004672|GO:0006468
Vvi17g728 349 PRINTS Tyrosine kinase catalytic domain signature 181 199 IPR001245 GO:0004672|GO:0006468
Vvi17g728 349 PRINTS Tyrosine kinase catalytic domain signature 247 269 IPR001245 GO:0004672|GO:0006468
Vvi17g728 349 PRINTS Tyrosine kinase catalytic domain signature 291 313 IPR001245 GO:0004672|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi14g1373 Vvi17g728 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76327 PF07714 PK_Tyr_Ser-Thr 2.10E-63 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g728 - - vvi:100250035 676.396