Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g729 ATGACCAAGATGAACGGGCCTCCGCTGAAACCAGATCGAAAGACTACAGAGAGGAACAGAAGAATTCACATGAAGAGCCTTTGCTTTAAGCTTTCTTCTCTCATCCCTCCCAATCAATTCAAAACCTCTAAGGACATGTTATCACAGCAAGACCAGCTGGAGCAGGCAGCAAACTACATAAAGCAACTGAAGGAAAGAATAGAGGAATTAAAGGGGAGGAAGGAGCTGGCAACGAGGGTTGCAGGAACAAACAATAATCTCATCGACGCGGTGATGATTGGCTTGAGATTGCCGGTGATCGATTTGAGGGACTTGGGTTCTAGTCTAGAAGTGATGCTGATTAGTGGGTTGAACAAGAACTTCATGTTATACGAGGTCATTAGTGTTCTTGAGGAAGAAGGAGCTGAAGTTGTGAGTGCTAGCGTTTCAACTGTGGGCGATAAGGTTTTCCACTCACTCCATGCCCAGGTCAAAATCTCTAGGGTTGGTGTAGAGACTTCAAGGGTCTGGCAGAGATTGCAGGAGTTAATCTACTGA 537 45.62 MTKMNGPPLKPDRKTTERNRRIHMKSLCFKLSSLIPPNQFKTSKDMLSQQDQLEQAANYIKQLKERIEELKGRKELATRVAGTNNNLIDAVMIGLRLPVIDLRDLGSSLEVMLISGLNKNFMLYEVISVLEEEGAEVVSASVSTVGDKVFHSLHAQVKISRVGVETSRVWQRLQELIY* 179
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 9199302 9201475 - Vvi17g729 Vvi17g729 779426

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g729 178 Pfam Helix-loop-helix DNA-binding domain 15 64 IPR011598 GO:0046983
Vvi17g729 178 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 8 63 IPR011598 GO:0046983
Vvi17g729 178 Gene3D - 9 90 IPR036638 GO:0046983
Vvi17g729 178 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 9 177 IPR015660 GO:0003700|GO:0006357
Vvi17g729 178 SMART finulus 14 69 IPR011598 GO:0046983
Vvi17g729 178 Coils Coil 46 80 - -
Vvi17g729 178 PANTHER TRANSCRIPTION FACTOR BHLH162 9 177 - -
Vvi17g729 178 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 14 78 IPR036638 GO:0046983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g729 - - - vvi:100253569 338.576
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g729 . . . . . Bpe13g00224 Bma06g00229 . . . . . . . . . . . . . . . . . . . . . . . . . Cone16ag0110 . . Lsi02g00364 Csa01g00841 Chy12g01276 Cme12g01703 . . Bda11g01637 . . . . . Sed08g2498 . . . Cma18g00161 . Car18g00154 . . Bhi08g01595 Tan05g2021 Cmetu12g1885 Lac10g0437 Hepe07g2234 . . Cla01g01291 Cam01g1438 Cec01g1473 Cco01g1453 Clacu01g1358 Cmu01g1261 Cre01g1272 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010270 3 1 0 2 1 1 1 1 1 2 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 2 1 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14230 PF00010 HLH 9.70E-08 No_clan Vvi TF