Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g73 ATGGACGATGAGTACGCAAAGCTTATCAGGAGAATGAACCCACCAAGAGTGGTCATTGACAATGATTCTTGTGGGCATGCCACAGTTATAGAGGTTGATAGTGCCAATAGGCATGGAATTCTCCTTCAAGTTGTTCAAGTTCTTACAGACCTCAACCTCATAATAACGAAAGCTTACATCTCTTCTGATGGAGGATGGTTCATGGATGTGTTCAATGTGACTGACCATGATGGAAACAAACTCAGAGATGAAGAGATCCTCAATTACTTACAAAAAACTCTTGAAACTGAAGCCGGTTTCTTGAATTCATTGAGAGGCTCAGTTGGGGTAATGCCTTCTAAGGAGGATACCTCCATTGAACTAACTGGCAGCGACAGACCCGGGTTGCTGTCGGAGGTGTCTGCAGTGCTGACAGACCTGAGATGCAACGTGGTAAACGCTGAGATCTGGACACACAACGCTAGAGCAGCAGCTGTTATTCATGTTACAGACCAGGCAACTGGGTGTGCGATAGAAGACCCAAAACGTCTCTCAATGATTAAGAAACGGCTCGGCAATGTCTTCAAAGGCAACAGCAGTTTCAGGACACCCAAAATGACCATATCTTCACCTGGGCCTGTGGCAATGAACAGAGATAGAAGACTGCATCAGATGATGTTTGCTGCTAGGGATTTCGAAAGGCTGGAATATGTCCAGGACAAAAACTCAAGGCCCCATGTCACTGTCTTGGATTGCAGTGATAGAGATTACACCGTTGTTACCATTAGGTCCAGAGACAGGCCAAAGCTATTATTTGATACTGTGTGTGCTCTAACAGATATGCAGTATGTTGTGTTCCATGGAACTGTCATCACAGGAAGAATGGAAGCTTATCAGGAACACTACATCAGACATGTGGATGGGCTCCCTTTACGTTCAGAAGCCGAGCGGCAACGTGTCACAGAGTGTCTTGAAGCCGCGATTGAAAGGCGAGCCTGGGAGGGACTGGTGCTGGAACTCAGCACAGAAGACCGGTTCGGCCTGCTCTCAGACGTTACAAGGGTTTTCCGGGAGAATGGTTTGTGCATCAAGCGAGCAGTAATCACAACAAAGTGTGGGAAAGCAAAGGATACTTTCTTTGTGACAGATGTGTCTGGCAACACTGTGGATTCCAAGACAGTTGAGATGATTAGGCAACAGATAGGACAAACCATATTGAGGGTGAAAGGGAACTTGAACTTCAGTCCGAAGCTTCCCCAGGAGGGAACAAGAAGTTTCCCCTTTGGGAACTTATTCAAAGGACGAAGCTTCCAAACTTTCAAACTCATCAAGTCCTACTCATAG 1323 46.18 MDDEYAKLIRRMNPPRVVIDNDSCGHATVIEVDSANRHGILLQVVQVLTDLNLIITKAYISSDGGWFMDVFNVTDHDGNKLRDEEILNYLQKTLETEAGFLNSLRGSVGVMPSKEDTSIELTGSDRPGLLSEVSAVLTDLRCNVVNAEIWTHNARAAAVIHVTDQATGCAIEDPKRLSMIKKRLGNVFKGNSSFRTPKMTISSPGPVAMNRDRRLHQMMFAARDFERLEYVQDKNSRPHVTVLDCSDRDYTVVTIRSRDRPKLLFDTVCALTDMQYVVFHGTVITGRMEAYQEHYIRHVDGLPLRSEAERQRVTECLEAAIERRAWEGLVLELSTEDRFGLLSDVTRVFRENGLCIKRAVITTKCGKAKDTFFVTDVSGNTVDSKTVEMIRQQIGQTILRVKGNLNFSPKLPQEGTRSFPFGNLFKGRSFQTFKLIKSYS* 441
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 723569 725613 - Vvi17g73 Vvi17g73 778770

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g73 440 CDD ACT_ACR_2 117 190 - -
Vvi17g73 440 ProSiteProfiles ACT domain profile. 330 409 IPR002912 -
Vvi17g73 440 ProSiteProfiles ACT domain profile. 29 106 IPR002912 -
Vvi17g73 440 PANTHER ACT DOMAIN-CONTAINING PROTEIN ACR4-RELATED 1 438 IPR040217 -
Vvi17g73 440 CDD ACT_ACR_3 250 324 - -
Vvi17g73 440 SUPERFAMILY ACT-like 114 187 IPR045865 -
Vvi17g73 440 ProSiteProfiles ACT domain profile. 118 202 IPR002912 -
Vvi17g73 440 PANTHER ACT DOMAIN-CONTAINING PROTEIN ACR4-LIKE 1 438 - -
Vvi17g73 440 SUPERFAMILY ACT-like 327 395 IPR045865 -
Vvi17g73 440 Gene3D - 116 193 - -
Vvi17g73 440 SUPERFAMILY ACT-like 24 95 IPR045865 -
Vvi17g73 440 Pfam ACT domain 117 165 IPR002912 -
Vvi17g73 440 Pfam ACT domain 28 86 IPR002912 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g73 - - - vvi:100256112 878.241
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g1301 Vvi17g73 ECH
Vvi14g1142 Vvi17g73 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g73 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Car18g00111 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006723 0 1 0 1 1 1 2 1 1 1 1 1 2 1 1 1 1 3 2 1 1 1 1 1 1 1 1 2 4 2 38