Cucurbitales platform

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi17g731	ATGCAAGCGCCAGTGCTGGTTCTCAAGGATTCTTTGACTCGCGAATCAGGAAGTAAGGTCCAGCATGCCAATATCCAAGCGTCAAAGGCTGTGGCTGACATAATCCGCACAACCTTGGGTCCAAGATCCATGTTGAAGATGTTACTTGATGCTGGAGGAGGTATTGTGGTCACTAATGATGGAAATTCTATTCTTCGGGAGTTAGATCTTGCTCATCCAGCTGCTAAGTCCATGATTGAATTAAGCCGCACACAAGATGAAGAAGTTGGTGATGGAACTACTTCAGTCATTGTTCTTGCTGGTGAGATGCTTCATGTTGCGGAAGCTTTCATAGACAAAAACTTTCACCCTACAGTCATATGTCGAGCTTATAATAAAGCTCTTGAGGATGCTATTGCGGTGCTTGACAAGATTGCAGCCCCTGTTGATGTGAATGACCGTGTTGCAATGTTGGGAATGGTGAAGAGTTGTATAGGTACAAAATTTACTGGTCAATTTGGGGATCTAATTGCTGATTTAGCACTTGATGCTACCACAACTGTTGGTGTGGACCTTGGTCAAGGATTGCGAGAAGTGGACATTAAGAAGTACATAAAGGTTGAGAAAGTCCCTGGTGGCCAGTTGGAAGATTCCAAGGTTCTTAAAGGAGTTATGATTAACAAAGATGTTGTGGCCCCTGGAAAAATGAGAAGAAAGATTATCAACCCTCGTATTATTCTTCTTGATTGCCCCCTTGAATATAAAAAAGGGGAGAACCAAACAAATGCAGAGTTGGTTAGAGAAGAAGACTGGGGAATTCTCCTGAAAATGGAGGAAGAATACATTGAGAATCTGTGCATGCAAATACTAAAATTCAAACCCGATTTGGTCATAACAGAAAAGGGGCTTAGTGACCTGGCATGCCATTACTTGAGTAAAGCTGGAGTTAGTGCAATCAGAAGATTGAGGAAAACAGACAACAACAGGATTGCTAAGGCATGTGGAGCTGTTGTTGTAAACAGACCAGATGAACTTCAAGAATCTGATGTAGGAACTAGGGCTGGAATTTTTGAGGTCAAGAAGATTGGAGATGAGTTCTTTGCTTTCATAGATGAGTGCACAGACCCTAAAGCATGCACTGTTCTTCTTAGAGGTGCGAGCAAGGATCTTTTGAATGAAGTGGAAAGAAACTTGCAGGATGCCATGTCTGTGGCAAGAAACATGATAAAGAATCCAAAGCTTGTTCCTGGTGGGGGTGCTACAGAGTTAACTGTTTCAGCTACCCTAAAACAGAAAAGTTCATCTGTTGAAGGCATTGAAAAGTGGCCTTATGAAGCTGCTGCTATAGCTTTTGAGGCTATTCCACGTACTTTGGCACAGAATTGTGGTGTGAATGTGATTAGGACTATGACTGCTTTGCAGGGAAAGCATGCAAATGGTGAAAATGCCTGGATCGGAATAGATGGAAGTACTGGTGCAATTACTGACATGAAGGAGCGTAAGATATGGGATGCTTATAATGTGAAGGCACAGACCTTTAAGACCGCCATCGAGGCTGCTTGCATGCTGCTTAGGATCGACGACATCGTGAGTGGAATAAAAAAGAAACAAGCCCCTGGAGCAGGCCAAGCTCCATCAAAGCCTACAATTGAGCAAGAAGGAGATGCAGACAACGAGCAAATGATTCCGGAGTAA	1674	43.13	MQAPVLVLKDSLTRESGSKVQHANIQASKAVADIIRTTLGPRSMLKMLLDAGGGIVVTNDGNSILRELDLAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEAFIDKNFHPTVICRAYNKALEDAIAVLDKIAAPVDVNDRVAMLGMVKSCIGTKFTGQFGDLIADLALDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSKVLKGVMINKDVVAPGKMRRKIINPRIILLDCPLEYKKGENQTNAELVREEDWGILLKMEEEYIENLCMQILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIAKACGAVVVNRPDELQESDVGTRAGIFEVKKIGDEFFAFIDECTDPKACTVLLRGASKDLLNEVERNLQDAMSVARNMIKNPKLVPGGGATELTVSATLKQKSSSVEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGSTGAITDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKKQAPGAGQAPSKPTIEQEGDADNEQMIPE*	558

Gff information

Chromosome	Start	End	Strand	Old_gene	Gene	Num
17	9224790	9239797	-	Vvi17g731	Vvi17g731	779428

Annotation

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Vvi17g731	557	TIGRFAM	chap_CCT_gamma: T-complex protein 1, gamma subunit	4	529	IPR012719	GO:0005524\|GO:0006457\|GO:0016887\|GO:0051082
Vvi17g731	557	ProSitePatterns	Chaperonins TCP-1 signature 1.	36	48	IPR002194	GO:0005524\|GO:0006457\|GO:0016887\|GO:0051082
Vvi17g731	557	ProSitePatterns	Chaperonins TCP-1 signature 3.	85	93	IPR002194	GO:0005524\|GO:0006457\|GO:0016887\|GO:0051082
Vvi17g731	557	SUPERFAMILY	GroEL equatorial domain-like	14	525	IPR027413	-
Vvi17g731	557	Gene3D	-	141	405	IPR027410	-
Vvi17g731	557	Gene3D	-	28	523	IPR027413	-
Vvi17g731	557	MobiDBLite	consensus disorder prediction	529	557	-	-
Vvi17g731	557	PRINTS	Tailless complex polypeptide 1 (chaperone) signature	33	49	IPR017998	GO:0140662
Vvi17g731	557	PRINTS	Tailless complex polypeptide 1 (chaperone) signature	55	73	IPR017998	GO:0140662
Vvi17g731	557	PRINTS	Tailless complex polypeptide 1 (chaperone) signature	85	104	IPR017998	GO:0140662
Vvi17g731	557	PRINTS	Tailless complex polypeptide 1 (chaperone) signature	373	395	IPR017998	GO:0140662
Vvi17g731	557	PRINTS	Tailless complex polypeptide 1 (chaperone) signature	407	419	IPR017998	GO:0140662
Vvi17g731	557	SUPERFAMILY	GroEL-intermediate domain like	142	404	IPR027410	-
Vvi17g731	557	PANTHER	CHAPERONIN	2	540	IPR017998	GO:0140662
Vvi17g731	557	Gene3D	GroEL	215	369	IPR027409	-
Vvi17g731	557	PANTHER	T-COMPLEX PROTEIN 1 SUBUNIT GAMMA	2	540	-	-
Vvi17g731	557	CDD	TCP1_gamma	4	525	IPR012719	GO:0005524\|GO:0006457\|GO:0016887\|GO:0051082
Vvi17g731	557	Coils	Coil	384	404	-	-
Vvi17g731	557	SUPERFAMILY	GroEL apical domain-like	210	378	IPR027409	-
Vvi17g731	557	Pfam	TCP-1/cpn60 chaperonin family	31	524	IPR002423	GO:0005524

Pathway

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi17g731	K09495	CCT3, TRIC5; T-complex protein 1 subunit gamma	-	vvi:100255417	1090.87

Deco-Alignment

Select	Vvi1	Blo1	Blo2	Bda1	Bda2	Bpe1	Bpe2	Bma1	Bma2	Cmo1	Cmo2	Cma1	Cma2	Car1	Car2	Sed1	Cpe1	Cpe2	Bhi1	Tan1	Cmetu1	Lac1	Hepe1	Mch1	Lcy1	Cla1	Cam1	Cec1	Cco1	Clacu1	Cmu1	Cre1	Cone1	Cone2	Cone3	Cone4	Lsi1	Csa1	Chy1	Cme1	Blo3	Blo4	Bda3	Bda4	Bpe3	Bpe4	Bma3	Bma4	Sed2	Cmo3	Cmo4	Cma3	Cma4	Car3	Car4	Cpe3	Cpe4	Bhi2	Tan2	Cmetu2	Lac2	Hepe2	Mch2	Lcy2	Cla2	Cam2	Cec2	Cco2	Clacu2	Cmu2	Cre2	Lsi2	Csa2	Chy2	Cme2
	Vvi17g731	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.

Syn-Orthogroups

Select	Orthogroup	Bda	Bhi	Blo	Bma	Bpe	Cam	Car	Cco	Cec	Chy	Cla	Clacu	Cma	Cme	Cmetu	Cmo	Cmu	Cone	Cpe	Cre	Csa	HCH	Hepe	Lac	Lcy	Lsi	Mch	Sed	Tan	Vvi	Total
	OG0006967	1	1	1	0	1	1	2	1	1	1	1	1	2	1	1	1	1	2	2	1	1	1	1	1	1	1	1	4	1	2	37