Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi17g738 | ATGTCTCAGCTGTTCATAGGGTGTAAATTCGCTTCAGGCCGGCACAGTAGGATTTATAGAGGGATATACAAGCAGAGGGATGTGGCGATTAAGCTCATAAGCCAGCCCGAGGAAGACGAGAGCCTGGCTAATTTGCTTGAGAAGCAGTTTACTTCGGAGGTTGCTTTGCTGTTTCGCCTGCGGCATCCTAATATCATCACTTTTGTTGCAGCATGTAAGAAACCTCCTGTGTTCTGTATAATCACCGAGTACTTGGCTGGGGGCTCCCTGAGAAAATTCCTCCATCAGCAGGAGCCATATTCAGTTCCATACGACCTGGTACTGAAATTTTCCCTAGACATTGCATGTGGGATGCAGTATCTTCATTCTCAGGGGATACTCCATAGGGATCTCAAATCAGAAAATCTACTACTTGGGGAAGATATGTGTGTGAAGGTGGCAGATTTTGGTATCTCATGCTTGGAGACTCAATGTGGCAGTGCAAAGGGATTTACAGGAACTTACCGTTGGATGGCTCCGGAAATGATCAAAGAAAAACACCATACAAAGAAAGTTGATGTTTACAGTTTTGGCATAGTCCTATGGGAGCTTTTAACTGCATTGATACCATTTGACAATATGACTCCAGAACAGGCTGCTTTTGCAGTCTCCCAAAAGAATGCAAGGCCACCATTAGACCCTGCATGCCCTATGGCATTTCGTCACCTCATCAGCAGATGCTGGTCAAGCAGCGCAGACAAGCGTCCCCATTTTGATGAGATTGTTTCGATTCTTGAAAGTTATTCAGAGTCTTTTAAGCAAGATCCGGATTTTTTCTCATCCTACAAACCATCCGATGATCATGCTTTTTTGAGATGCTTACCAAAGTGTATTGCTGCCCGAAGATCTTCTGCTTCTTTGGAAGCCTAA | 909 | 44.55 | MSQLFIGCKFASGRHSRIYRGIYKQRDVAIKLISQPEEDESLANLLEKQFTSEVALLFRLRHPNIITFVAACKKPPVFCIITEYLAGGSLRKFLHQQEPYSVPYDLVLKFSLDIACGMQYLHSQGILHRDLKSENLLLGEDMCVKVADFGISCLETQCGSAKGFTGTYRWMAPEMIKEKHHTKKVDVYSFGIVLWELLTALIPFDNMTPEQAAFAVSQKNARPPLDPACPMAFRHLISRCWSSSADKRPHFDEIVSILESYSESFKQDPDFFSSYKPSDDHAFLRCLPKCIAARRSSASLEA* | 303 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
17 | 9308907 | 9314007 | + | Vvi17g738 | Vvi17g738 | 779435 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi17g738 | 302 | PANTHER | SERINE-THREONINE PROTEIN KINASE | 1 | 280 | - | - | |
Vvi17g738 | 302 | Pfam | Protein tyrosine and serine/threonine kinase | 8 | 258 | IPR001245 | GO:0004672|GO:0006468 | |
Vvi17g738 | 302 | PIRSF | ILK | 4 | 276 | - | - | |
Vvi17g738 | 302 | CDD | STKc_MAP3K-like | 11 | 258 | - | - | |
Vvi17g738 | 302 | SUPERFAMILY | Protein kinase-like (PK-like) | 4 | 258 | IPR011009 | - | |
Vvi17g738 | 302 | Gene3D | Phosphorylase Kinase; domain 1 | 1 | 86 | - | - | |
Vvi17g738 | 302 | ProSiteProfiles | Protein kinase domain profile. | 4 | 284 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vvi17g738 | 302 | PANTHER | SERINE/THREONINE-PROTEIN KINASE HT1-LIKE | 1 | 280 | - | - | |
Vvi17g738 | 302 | SMART | serkin_6 | 4 | 262 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vvi17g738 | 302 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 126 | 138 | IPR008271 | GO:0004672|GO:0006468 | |
Vvi17g738 | 302 | PRINTS | Tyrosine kinase catalytic domain signature | 82 | 95 | IPR001245 | GO:0004672|GO:0006468 | |
Vvi17g738 | 302 | PRINTS | Tyrosine kinase catalytic domain signature | 120 | 138 | IPR001245 | GO:0004672|GO:0006468 | |
Vvi17g738 | 302 | PRINTS | Tyrosine kinase catalytic domain signature | 166 | 176 | IPR001245 | GO:0004672|GO:0006468 | |
Vvi17g738 | 302 | PRINTS | Tyrosine kinase catalytic domain signature | 185 | 207 | IPR001245 | GO:0004672|GO:0006468 | |
Vvi17g738 | 302 | PRINTS | Tyrosine kinase catalytic domain signature | 229 | 251 | IPR001245 | GO:0004672|GO:0006468 | |
Vvi17g738 | 302 | Gene3D | Transferase(Phosphotransferase) domain 1 | 87 | 281 | - | - |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
76328 | PF07714 | PK_Tyr_Ser-Thr | 1.00E-62 | CL0016 | Vvi | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi17g738 | - | - | vvi:100244957 | 602.823 |