Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g738 ATGTCTCAGCTGTTCATAGGGTGTAAATTCGCTTCAGGCCGGCACAGTAGGATTTATAGAGGGATATACAAGCAGAGGGATGTGGCGATTAAGCTCATAAGCCAGCCCGAGGAAGACGAGAGCCTGGCTAATTTGCTTGAGAAGCAGTTTACTTCGGAGGTTGCTTTGCTGTTTCGCCTGCGGCATCCTAATATCATCACTTTTGTTGCAGCATGTAAGAAACCTCCTGTGTTCTGTATAATCACCGAGTACTTGGCTGGGGGCTCCCTGAGAAAATTCCTCCATCAGCAGGAGCCATATTCAGTTCCATACGACCTGGTACTGAAATTTTCCCTAGACATTGCATGTGGGATGCAGTATCTTCATTCTCAGGGGATACTCCATAGGGATCTCAAATCAGAAAATCTACTACTTGGGGAAGATATGTGTGTGAAGGTGGCAGATTTTGGTATCTCATGCTTGGAGACTCAATGTGGCAGTGCAAAGGGATTTACAGGAACTTACCGTTGGATGGCTCCGGAAATGATCAAAGAAAAACACCATACAAAGAAAGTTGATGTTTACAGTTTTGGCATAGTCCTATGGGAGCTTTTAACTGCATTGATACCATTTGACAATATGACTCCAGAACAGGCTGCTTTTGCAGTCTCCCAAAAGAATGCAAGGCCACCATTAGACCCTGCATGCCCTATGGCATTTCGTCACCTCATCAGCAGATGCTGGTCAAGCAGCGCAGACAAGCGTCCCCATTTTGATGAGATTGTTTCGATTCTTGAAAGTTATTCAGAGTCTTTTAAGCAAGATCCGGATTTTTTCTCATCCTACAAACCATCCGATGATCATGCTTTTTTGAGATGCTTACCAAAGTGTATTGCTGCCCGAAGATCTTCTGCTTCTTTGGAAGCCTAA 909 44.55 MSQLFIGCKFASGRHSRIYRGIYKQRDVAIKLISQPEEDESLANLLEKQFTSEVALLFRLRHPNIITFVAACKKPPVFCIITEYLAGGSLRKFLHQQEPYSVPYDLVLKFSLDIACGMQYLHSQGILHRDLKSENLLLGEDMCVKVADFGISCLETQCGSAKGFTGTYRWMAPEMIKEKHHTKKVDVYSFGIVLWELLTALIPFDNMTPEQAAFAVSQKNARPPLDPACPMAFRHLISRCWSSSADKRPHFDEIVSILESYSESFKQDPDFFSSYKPSDDHAFLRCLPKCIAARRSSASLEA* 303
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 9308907 9314007 + Vvi17g738 Vvi17g738 779435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g738 302 PANTHER SERINE-THREONINE PROTEIN KINASE 1 280 - -
Vvi17g738 302 Pfam Protein tyrosine and serine/threonine kinase 8 258 IPR001245 GO:0004672|GO:0006468
Vvi17g738 302 PIRSF ILK 4 276 - -
Vvi17g738 302 CDD STKc_MAP3K-like 11 258 - -
Vvi17g738 302 SUPERFAMILY Protein kinase-like (PK-like) 4 258 IPR011009 -
Vvi17g738 302 Gene3D Phosphorylase Kinase; domain 1 1 86 - -
Vvi17g738 302 ProSiteProfiles Protein kinase domain profile. 4 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g738 302 PANTHER SERINE/THREONINE-PROTEIN KINASE HT1-LIKE 1 280 - -
Vvi17g738 302 SMART serkin_6 4 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g738 302 ProSitePatterns Serine/Threonine protein kinases active-site signature. 126 138 IPR008271 GO:0004672|GO:0006468
Vvi17g738 302 PRINTS Tyrosine kinase catalytic domain signature 82 95 IPR001245 GO:0004672|GO:0006468
Vvi17g738 302 PRINTS Tyrosine kinase catalytic domain signature 120 138 IPR001245 GO:0004672|GO:0006468
Vvi17g738 302 PRINTS Tyrosine kinase catalytic domain signature 166 176 IPR001245 GO:0004672|GO:0006468
Vvi17g738 302 PRINTS Tyrosine kinase catalytic domain signature 185 207 IPR001245 GO:0004672|GO:0006468
Vvi17g738 302 PRINTS Tyrosine kinase catalytic domain signature 229 251 IPR001245 GO:0004672|GO:0006468
Vvi17g738 302 Gene3D Transferase(Phosphotransferase) domain 1 87 281 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76328 PF07714 PK_Tyr_Ser-Thr 1.00E-62 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g738 - - vvi:100244957 602.823