Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g740 ATGCCTGGAGTTGTCATGGAGGGTGTCAACGAAGATGGGGTAGCCAATGAATTAAATGGAAGTTCCACAGCTTTTAAGGAAAATTCAGCTTCAAACAAGTCGCCAAAAAGCAATTTGGGTCTGCAAAGTCCTCCTCGGAGTGCTGGTGTTGAATTCCCTATGAATGGGGTGATTGACACCTCCATCGAACAGCTTTATGATAACGTATGTGAGATGCAGAGTTCTGATCAATCACCATCAAGGGTTAGCTTTGGATCTGAAGGGGAAGAATCAAGGATTGATTCAGAGTTGCGTCATCTTGTGGGTGGAGAGATGAGGGAGAAGGAAAGCCTGTCTGCAGGTAAGCATAGAAGTCCTCAGGGGAAACCTCCCAGGGTGAAGTTACAGAATGGAACTGATGATTCATCTGAAGCAGGATTGGATAACCCGAATCTTGGGCGATTTCTACTTAAGCAAGCAAGGGATTTGATTTCTTCTGGAGATAATCCACAGAAGGCTCTTGAATTAGCTCTTCGAGCCACAAAATCATATGAGAAATGCGCAAACGGAAAACCCAGTTTAGAACAAGTCATGTGCTTGCATGTTACAGCAGCAATATACTGCAATTTAGGCCAATATAATGAGGCAATCCCAGTTCTTGAGCACTCAATTGAGATTCCAGTGATTGAAGAAGGCCAAGATCATGCACTTGCTAAATTTGCTGGGCATATGCAGTTGGGTGATACTTATGCAATGGTGGGCCAACTTGAGAATTCAATACTCTGTTACACAACGGGTTTGGGAGTCCAGAAACAAGTTTTGGGAGACACGGACCCAAGAGTTGGGGAGACTTGCAGGTACTTGGCTGAAGCTCATGTTCAAGCACTGCAATTTGATGAGGCTGAGAAGCTTTGTCAAATGGCCCTTGACATCCATAGAGAGAATGGTTCACCTGCTTCCCTTGAAGAGGCAGCAGATAGGAGGCTCATGGGGCTTATATGTGAAATGAAGGGCGATCATGAGGCTGCTCTTGAGCATCTTATATTGGCTAGCATGGCTATGGTGGCCAATGGGCAGGAAATAGAGGTGGCTTCTGTTGATTGTAGTATTGGGGACACCTACTTATCTCTGTCTCGGTATGATGAGGCTATTTTTGCTTATCAAAAAGCACTCACTGTTTTTAAGACCACCAAAGGAGAGAATCATCCGTCAGTTGCTTCAGTGTTTGTGCGTCTGGCGGATTTGTATAACAAGACAGGAAAGTTAAGGGAATCAAAATCTTATTGTGAGAATGCCCTTCGAATTTATGGAAAGCCGATTCCTGGCATTCCCCCAGAGGAGATCGCTAGTGGTCTAACTGATGTTTCTGCTATTTATGAGTCCATGGATGAGCTTGAGCAGGCACTCAGCTTGCTCCAGAAAGCATTAAAGATATATAACGATGCCCCTGGTCAGCAAAGCACAACAGCAGGAATTGAAGCCCAGATGGGGGTGATGTATTATATGTTGGGGAACTACTCTGATTCTTACAACTCCTTCAAGAATGCCATTTCAAAGCTCCGTGCAAGTGGAGAGAAGAAATCTGCCTTCTTTGGGATTGCTCTGAATCAAATGGGGCTGGCTTGTGTGCAGCGTTATGCCATAAATGAGGCTGCAGAATTGTTTGAAGAGGCCAGGGATATCTTGGAACAAGAGTATGGACCATATCACCCTGACACACTGGGCGTATATAGCAACCTAGCTGGAACTTATGACGCGGTTGGAAGATTGGATGATGCAATTGAAATCTTGGAACATGTAGTGGGGATGAGGGAGGAAAAGCTTGGGACAGCAAATCCAGATGTGGATGACGAGAAGAGGAGGTTGGCTGAGTTGTTAAAAGAAGCAGGCAAGGTCCGCAACAGAAAAGCCAGATCACTAGAGACCCTCCTTGATGTCAACTCTCAAACTGTAAACAACGATGACATCAAGGTATGA 1956 45.04 MPGVVMEGVNEDGVANELNGSSTAFKENSASNKSPKSNLGLQSPPRSAGVEFPMNGVIDTSIEQLYDNVCEMQSSDQSPSRVSFGSEGEESRIDSELRHLVGGEMREKESLSAGKHRSPQGKPPRVKLQNGTDDSSEAGLDNPNLGRFLLKQARDLISSGDNPQKALELALRATKSYEKCANGKPSLEQVMCLHVTAAIYCNLGQYNEAIPVLEHSIEIPVIEEGQDHALAKFAGHMQLGDTYAMVGQLENSILCYTTGLGVQKQVLGDTDPRVGETCRYLAEAHVQALQFDEAEKLCQMALDIHRENGSPASLEEAADRRLMGLICEMKGDHEAALEHLILASMAMVANGQEIEVASVDCSIGDTYLSLSRYDEAIFAYQKALTVFKTTKGENHPSVASVFVRLADLYNKTGKLRESKSYCENALRIYGKPIPGIPPEEIASGLTDVSAIYESMDELEQALSLLQKALKIYNDAPGQQSTTAGIEAQMGVMYYMLGNYSDSYNSFKNAISKLRASGEKKSAFFGIALNQMGLACVQRYAINEAAELFEEARDILEQEYGPYHPDTLGVYSNLAGTYDAVGRLDDAIEILEHVVGMREEKLGTANPDVDDEKRRLAELLKEAGKVRNRKARSLETLLDVNSQTVNNDDIKV* 652
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 9345960 9349253 + Vvi17g740 Vvi17g740 779437

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g740 651 Coils Coil 608 628 - -
Vvi17g740 651 Coils Coil 455 475 - -
Vvi17g740 651 Pfam Tetratricopeptide repeat 526 598 - -
Vvi17g740 651 Pfam Tetratricopeptide repeat 356 429 - -
Vvi17g740 651 Pfam Tetratricopeptide repeat 281 340 - -
Vvi17g740 651 SUPERFAMILY TPR-like 361 594 IPR011990 GO:0005515
Vvi17g740 651 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 1 111 - -
Vvi17g740 651 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 122 640 - -
Vvi17g740 651 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 122 640 - -
Vvi17g740 651 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 1 111 - -
Vvi17g740 651 SMART tpr_5 275 308 IPR019734 GO:0005515
Vvi17g740 651 SMART tpr_5 317 350 IPR019734 GO:0005515
Vvi17g740 651 SMART tpr_5 525 558 IPR019734 GO:0005515
Vvi17g740 651 SMART tpr_5 483 516 IPR019734 GO:0005515
Vvi17g740 651 SMART tpr_5 442 475 IPR019734 GO:0005515
Vvi17g740 651 SMART tpr_5 567 600 IPR019734 GO:0005515
Vvi17g740 651 SMART tpr_5 233 266 IPR019734 GO:0005515
Vvi17g740 651 SMART tpr_5 190 223 IPR019734 GO:0005515
Vvi17g740 651 SMART tpr_5 357 390 IPR019734 GO:0005515
Vvi17g740 651 SMART tpr_5 399 432 IPR019734 GO:0005515
Vvi17g740 651 MobiDBLite consensus disorder prediction 72 143 - -
Vvi17g740 651 MobiDBLite consensus disorder prediction 87 115 - -
Vvi17g740 651 Gene3D Tetratricopeptide repeat domain 132 232 IPR011990 GO:0005515
Vvi17g740 651 Gene3D Tetratricopeptide repeat domain 344 525 IPR011990 GO:0005515
Vvi17g740 651 MobiDBLite consensus disorder prediction 15 44 - -
Vvi17g740 651 ProSiteProfiles TPR repeat profile. 442 475 IPR019734 GO:0005515
Vvi17g740 651 SUPERFAMILY TPR-like 168 428 IPR011990 GO:0005515
Vvi17g740 651 Gene3D Tetratricopeptide repeat domain 526 651 IPR011990 GO:0005515
Vvi17g740 651 Gene3D Tetratricopeptide repeat domain 233 343 IPR011990 GO:0005515
Vvi17g740 651 MobiDBLite consensus disorder prediction 1 53 - -
Vvi17g740 651 ProSiteProfiles TPR repeat profile. 357 390 IPR019734 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g740 - - - vvi:100255253 1217.22
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi14g1362 Vvi17g740 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g740 . . Bda06g00593 . . . Bma06g00233 . . . Cma10g00126 Cma11g00097 Car10g00117 Car11g00097 . . Cpe04g01552 Bhi02g00439 Tan09g2242 . . Hepe09g0198 . . Cla06g01660 Cam06g1845 Cec06g1896 Cco06g1901 Clacu06g1804 Cmu06g1745 Cre06g2564 Cone2ag0905 Cone16ag0107 . . . . . . . Blo15g00269 Bda11g01660 . Bpe07g00835 . . . . Cmo10g00132 Cmo11g00097 . . . . . Cpe18g00843 . . . . . . . . . . . . . . Lsi06g01550 Csa01g00154 Chy02g02576 Cme02g01966
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003461 3 3 3 3 3 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 1 2 2 48