Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g745 ATGGCTCTGAATCTCCTCCCTCCGGCAGAAATTAAGTTAATTTCGTTCCTGGATTCCACTAAATCCACTCGCCTCCCCAAGCTTCCAGGTGGATTTGTTTTAAAGAGAAAGGATTATGGAGCAACATTTGGTAGAAGAGTTAACTGTTCAGCACAGCCGCCTCCTCCAGCCTGGCCAGGACGAGCTGTTCCTGAGCTGGGGCGCAAGACTTGGGATGGTCCAAAGCCTCTCTCAGTTGTTGGATCTACTGGCTCCATTGGAACTCAGACACTGGACATAGTTGCAGAGAATCCTGATAAATTCAGAATTGTGGCACTTGCAGCTGGTTCCAATGTGACTCTTCTTGCTGATCAGGTGAAGACGTTCAAGCCTCAATTAGTTGCTGTGAGAAATGAGGCATTAGTCAATGAACTCAAAGAGGCTTTGGCTGACTGTGAACACAAGCCTGAGATCATCCCTGGAGAGCAAGGTGTAATTGAGGTTGCCCGCCACCCAGAGGCAGTCACTGTAGTGACAGGAATAGTAGGTTGCGCAGGTTTAAAACCTACAGTGGCTGCAATAGAAGCAGGGAAAGACATAGCCTTAGCCAACAAAGAGACCCTAATTGCTGGGGGTCCTTTTGTCCTTCCTCTTGCACACAAGCACAATGTAAAGATCCTTCCTGCTGACTCAGAACACTCTGCAATATTTCAGTGTATTCAGGGTTTGCCTGAGGGAGCACTTCGGCGCATTCTTTTAACTGCATCTGGAGGGGCATTCAGGGATTGGCCCGTTGATAAATTGAAAGAAGCTAAAGTTTCAGATGCTTTGAAGCATCCTAACTGGAATATGGGGAAAAAGATCACGGTTGACTCAGCTACCCTTTTCAATAAGGGTTTAGAAGTTATTGAAGCACACTATCTGTTTGGGGCTGAATATGATGATATTGAGATCATAATTCATCCACAATCTATCATACATTCTATGGTCGAAACACAGGATTCGTCTGTCCTGGCACAGTTGGGGTGGCCTGATATGCGTTTGCCAATCCTCTATACTTTATCGTGGCCAGACAGAATTTACTGCTCTGAGATAACTTGGCCACGACTTGATCTTTGCAAGCTTGGGTCACTGACATTTAAAACTCCTGACAATGTGAAATATCCATCCATGGATCTTGCCTATGCTGCTGGACGGGCTGGAGGCACCATGACAGGAGTTCTTAGTGCAGCTAATGAGAAGGCTGTGGAGATGTTTATTGATGAAAAGATTGGCTATCTAGATATATTCAAGGTCGTGGAACTAACATGTGATAAGCACCAGGCAGAGTTAGTAACTTCACCATCCCTCGAGGAAATCGTACATTATGACCTCTGGGCCCGGGACTATGCAGCCAGTTTACATCATTCTTCCAGTTTAATGCCTGTTCCAGCATGA 1416 45.9 MALNLLPPAEIKLISFLDSTKSTRLPKLPGGFVLKRKDYGATFGRRVNCSAQPPPPAWPGRAVPELGRKTWDGPKPLSVVGSTGSIGTQTLDIVAENPDKFRIVALAAGSNVTLLADQVKTFKPQLVAVRNEALVNELKEALADCEHKPEIIPGEQGVIEVARHPEAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNVKILPADSEHSAIFQCIQGLPEGALRRILLTASGGAFRDWPVDKLKEAKVSDALKHPNWNMGKKITVDSATLFNKGLEVIEAHYLFGAEYDDIEIIIHPQSIIHSMVETQDSSVLAQLGWPDMRLPILYTLSWPDRIYCSEITWPRLDLCKLGSLTFKTPDNVKYPSMDLAYAAGRAGGTMTGVLSAANEKAVEMFIDEKIGYLDIFKVVELTCDKHQAELVTSPSLEEIVHYDLWARDYAASLHHSSSLMPVPA* 472
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 9583250 9590379 - Vvi17g745 Vvi17g745 779442

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g745 471 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 200 337 - -
Vvi17g745 471 Gene3D - 379 464 - -
Vvi17g745 471 Pfam DXP reductoisomerase C-terminal domain 334 455 IPR026877 -
Vvi17g745 471 Gene3D - 69 223 - -
Vvi17g745 471 Pfam 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain 219 302 IPR013644 GO:0005515
Vvi17g745 471 Hamap 1-deoxy-D-xylulose 5-phosphate reductoisomerase [dxr]. 77 460 IPR003821 GO:0008299|GO:0030604|GO:0046872
Vvi17g745 471 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 74 223 IPR036291 -
Vvi17g745 471 PANTHER 1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE-RELATED 1 464 - -
Vvi17g745 471 PIRSF Dxp_reductoisomrs 74 466 IPR003821 GO:0008299|GO:0030604|GO:0046872
Vvi17g745 471 PANTHER 1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE 1 464 IPR003821 GO:0008299|GO:0030604|GO:0046872
Vvi17g745 471 SUPERFAMILY 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 367 461 IPR036169 -
Vvi17g745 471 Pfam 1-deoxy-D-xylulose 5-phosphate reductoisomerase 78 205 IPR013512 GO:0070402
Vvi17g745 471 TIGRFAM Dxr: 1-deoxy-D-xylulose 5-phosphate reductoisomerase 75 457 IPR003821 GO:0008299|GO:0030604|GO:0046872
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g745 K00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267] - vvi:100248516 929.858
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g745 . . Bda06g00595 . . . . . . . Cma10g00125 . . . . . . . . . . . . . Cla06g01661 Cam06g1846 Cec06g1897 Cco06g1902 Clacu06g1805 Cmu06g1746 Cre06g2565 Cone2ag0907 Cone16ag0103 . . . . . . . . . . Bpe07g00836 . . . . Cmo10g00130 . . . . . . Cpe18g00844 . . . . . . . . . . . . . . . Csa01g00150 Chy02g02578 Cme02g01980
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009834 1 1 1 0 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 32