Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g746 ATGGCGACTCAATCCACGCCTCCTCCCGACTCTACAACCGAAAAACCCCAAACCCCAGCTTCTGAAATCGTACAACCAAGAAATGAGGATCAGCAAGATGCCAAGGCAGCAGCTACTATTTCTCCACCATCCGTGTTTGTGAACTCAGAACCCATGCGAGAGGAACAAGTACAAAATGCTGTTAAATTTCTTTCACACCCGAAAGTTAGAGGCTCTCCAGTCATCTACCGGCGATCTTTTCTTGAGAAAAAGGGCCTCACAAAAGAGGAGATAGATGAAGCCTTTCGCCGTGTACCTGACCAATCTCCAACTGTTACAGGTGTGCAGGCAGTTAGTGCAAATCAAGATGGGCAGTTGAAGTCATCAAACATCCAACAGCAAGCCCAGGCACAAACTCTGCATCCTTCAGCAGCCACTCCTGCTGGTGTCATTTCCAAAACGGGAACCCAGTATCGATTTCACTGGTCTCATGCTTTTCTTGCTATAGGATTCCTTGCAGCTTCAGGTGCCGGAACAGCTATACTTTTTAAGAATGCTTTTATTCCTAGGTTGAAGTCCTGGATTCGCAAAATTGTATTGGAAGGGGAAAATGACATTGTGCAGAAATCTAACTCAAAACCAAGTTTGGCAGAAGAAGCAACAGCTGCCGCAAAAGCAGCTGCAGCTGCAGCTGCTGATGTGGCAAAAACAAGCCAGGAAATATTGACTTCTAAAATTGAAGAGAACAGACGACTGGAGGAATTTATGAATCTGTTAAATGTGCAAGTACAGGAAATGAAGTCAATGAGTAATGCTATTAGGAAGTTGGAAGGACCAAATAATTCAACTGGGAGACTAATTCAACAAGAAGATACTAGAGGCCTAATGACAACTTCAAAACATTTAAATGTGAATGGAAAGGCAGAATTTGACTCACGCTCAGTGAGATCTTCATCGCCACCTGCATCTTCTGAACCCTCTGTTGCACCTCACCCAAAGTCATATTTGGAGATCATGGCCATGGTCCAGAGAGGGGAGAAACCTCCTAACATTAGAGACATCAATGATTTACCCCCCAACCCTAATCAGCCACTTTCAAATCCTCGCTTGGCTCCAAGAACTAAGCCATGGGAAGTTGGACAGGTTCAATACAGCGCAGGCCATGCCTATCAGTCTCAAGTAACTGGTGAAGGTTTCAATTCCAGGGCACAAGATAATGGAGTCGGCTATCAGTTGAATGGTGACAGTTCAACTTGGTGGCAGCAAAAGAATGCCAGAATCACAGAAATTGAAACTGAAGATGAACCCAGGACCGCATCTTATACAGCAAGTAATGAGCAACCCATTCAGCGTACCTGGGTTCCTCCCCAGCCACCCCCTATTGCAATGCCAGAAGCAGCTGCAGCCATCCGACAGCCAAAATCTTCTATTCAGAGAGAATCATTAGTTAATGATCAGTCAGTATCTCGTCCTTCAGATGAAATTGATGAGTTGCAGAGGATCACAAAGATATCTGAATCTGGAGGTGTAGTTGAGATCAAAGAAGAGAGCTCAGGACTGAACTCAAGTGAGATGCAACAAGAACAAGAGTAA 1572 44.78 MATQSTPPPDSTTEKPQTPASEIVQPRNEDQQDAKAAATISPPSVFVNSEPMREEQVQNAVKFLSHPKVRGSPVIYRRSFLEKKGLTKEEIDEAFRRVPDQSPTVTGVQAVSANQDGQLKSSNIQQQAQAQTLHPSAATPAGVISKTGTQYRFHWSHAFLAIGFLAASGAGTAILFKNAFIPRLKSWIRKIVLEGENDIVQKSNSKPSLAEEATAAAKAAAAAAADVAKTSQEILTSKIEENRRLEEFMNLLNVQVQEMKSMSNAIRKLEGPNNSTGRLIQQEDTRGLMTTSKHLNVNGKAEFDSRSVRSSSPPASSEPSVAPHPKSYLEIMAMVQRGEKPPNIRDINDLPPNPNQPLSNPRLAPRTKPWEVGQVQYSAGHAYQSQVTGEGFNSRAQDNGVGYQLNGDSSTWWQQKNARITEIETEDEPRTASYTASNEQPIQRTWVPPQPPPIAMPEAAAAIRQPKSSIQRESLVNDQSVSRPSDEIDELQRITKISESGGVVEIKEESSGLNSSEMQQEQE* 524
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 9600463 9610562 - Vvi17g746 Vvi17g746 779443

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g746 523 PANTHER PEROXISOMAL MEMBRANE PROTEIN PEX14 1 518 IPR025655 GO:0005515|GO:0005778|GO:0016560
Vvi17g746 523 MobiDBLite consensus disorder prediction 341 366 - -
Vvi17g746 523 MobiDBLite consensus disorder prediction 1 43 - -
Vvi17g746 523 MobiDBLite consensus disorder prediction 467 482 - -
Vvi17g746 523 MobiDBLite consensus disorder prediction 424 523 - -
Vvi17g746 523 Pfam Family of unknown function (DUF5572) 323 372 - -
Vvi17g746 523 MobiDBLite consensus disorder prediction 430 444 - -
Vvi17g746 523 Pfam Pex14 N-terminal domain 53 97 IPR006785 -
Vvi17g746 523 MobiDBLite consensus disorder prediction 509 523 - -
Vvi17g746 523 Gene3D - 45 108 IPR036388 -
Vvi17g746 523 MobiDBLite consensus disorder prediction 267 317 - -
Vvi17g746 523 MobiDBLite consensus disorder prediction 267 324 - -
Vvi17g746 523 PANTHER PEROXISOMAL MEMBRANE PROTEIN PEX14-LIKE 1 518 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g746 K13343 PEX14; peroxin-14 - vvi:100253619 959.903
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g746 . . . . . . . Bma12g01035 . . . Cma11g00095 Car10g00115 Car11g00095 . . . . . . . . . . . . . . . . . . . . . . . . . Blo13g00057 Blo15g00268 . . . . . . . . Cmo11g00095 . . . . . . . . . . . . . . . . . . . . . . . Cme02g01981
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005495 1 2 2 2 1 0 2 0 1 1 1 0 1 1 1 1 0 3 1 0 1 2 1 2 2 0 2 5 3 1 40