Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g751 ATGGATATGGCGACGAGCTCATCTGATGTAGCCATTGAAGGACTGAGGCCGCTTCTGAGTGATAAGGAAGGTCTGGATGAAATAGCTGCAGCAAAAATTGAGAAGTTGACCGCTGAGTTGCAAGAGCAAGAGCAGGAGCAAGATCATGAGTGTGATCCTGTCGAGAGGATTAAAGACGGGTTTATTCACTTCAAAATCCACCATTTCGACAAGTATCCAGATTACTATAAACAACTTGCAGAAGGGCAGCACCCCAAGTTTCTGGTGTTTGCGTGCTCTGACTCCCGCGTTAGCCCCTCTCATGTCCTCAACTTCAAGCCAGGGGAAGCCTTCATGTGCAGGAACATTGCTAACTTGGTTCCTGCATTTAACCAGTTGAGGTACTCAGGAGTTGGTGCAGTCATTGAATATGCAGTCAAGCATCTTGAGGTGGAGAACATCCTGGTCATAGGGCATAGTCGCTGTGGTGGGATAGAGGCCCTTATGTCTCTTCCTGCTGATGGAACTACTTCCAATGACTTCATCGATGACTGGGTCAAAATTGCTTTACCAGCCAAGGCCAAGGTGGAATCAGAGTGGAGCGATGCAACATTTGAGCAACAATGTGAATATTTGGGAAGGGAATCGGTGAATTTGTCCCTAGTCAATCTGCTGAGTTATCCATATGTGCAAGCAGCATTAGCTAATAAAGCTTTGAAGTTGATGGGTGGTTACTACGACTTCGTTAATGGAACTTTTGGGCTCTGGAAAGCTGATTTTGATATTAAACCCCCAATTATCATATAA 786 45.42 MDMATSSSDVAIEGLRPLLSDKEGLDEIAAAKIEKLTAELQEQEQEQDHECDPVERIKDGFIHFKIHHFDKYPDYYKQLAEGQHPKFLVFACSDSRVSPSHVLNFKPGEAFMCRNIANLVPAFNQLRYSGVGAVIEYAVKHLEVENILVIGHSRCGGIEALMSLPADGTTSNDFIDDWVKIALPAKAKVESEWSDATFEQQCEYLGRESVNLSLVNLLSYPYVQAALANKALKLMGGYYDFVNGTFGLWKADFDIKPPIII* 262
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 9687219 9689610 + Vvi17g751 Vvi17g751 779448

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g751 261 Pfam Carbonic anhydrase 88 245 IPR001765 GO:0004089|GO:0008270
Vvi17g751 261 ProSitePatterns Prokaryotic-type carbonic anhydrases signature 2. 136 156 IPR015892 GO:0004089|GO:0008270|GO:0015976
Vvi17g751 261 SMART Pro_CA_2 80 250 IPR001765 GO:0004089|GO:0008270
Vvi17g751 261 SUPERFAMILY beta-carbonic anhydrase, cab 53 255 IPR036874 GO:0004089|GO:0008270
Vvi17g751 261 Coils Coil 26 46 - -
Vvi17g751 261 CDD beta_CA_cladeB 60 249 IPR045066 GO:0004089|GO:0008270
Vvi17g751 261 ProSitePatterns Prokaryotic-type carbonic anhydrases signature 1. 92 99 IPR015892 GO:0004089|GO:0008270|GO:0015976
Vvi17g751 261 Gene3D Carbonic anhydrase 42 260 IPR036874 GO:0004089|GO:0008270
Vvi17g751 261 PANTHER CARBONIC ANHYDRASE 1 260 IPR001765 GO:0004089|GO:0008270
Vvi17g751 261 PANTHER CARBONIC ANHYDRASE 1 260 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g751 K01673 cynT, can; carbonic anhydrase [EC:4.2.1.1] - vvi:100258765 499.975
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi14g1354 Vvi17g751 ECH
Vvi1g705 Vvi17g751 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g751 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003345 2 3 1 2 2 1 2 1 1 1 1 1 1 1 1 1 1 4 2 1 1 1 1 1 1 1 1 6 1 4 48