Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g757 ATGGTTCTGCCGGCTGGAAATTCAATTCACCGGTCCGGTTCTCGGCCGCAGCTTGACCTTAGTGGTGCAGCCATTCAAGGGAACAATTTTGAGGAAAGGCATCCAACAATTCTCTTGCCCAATCAGTCTGATGATATATCTCATCTGGCTTTGGACATTGGAGGATCTCTCATTAAGTTGGTGTATTTTTCAAGACATGAAGACCGGTCAATTGATGATAAGAGGAAAAGGTCTATCAAGGAGAGATTGGGAGTTACAAATGGTAATAGGAGAAGCTACCCTATTCTTGGTGGAAGGCTCCATTTTGTGAAGTTTGAGACAAGCAAGATTAATGAATGCTTGGACTTCATTAATTCTAAGCAGCTTCATCGTGGCGGGATGGACTCACGCCTTTGGCTTTCTGAGGCCCCACCCAGTGATGATGTCATAATTAAGGCCACAGGTGGTGGAGCACACAAGTTTGCAGATCTCTTCAAAGAAAGGCTTGGGGTTAGTATTGACAAAGAAGATGAAATGGATTGTCTTGTGGCTGGAGCAAATTTTTTACTTAAGGCAATCCGTCATGAAGCTTTCACACACATGGAAGGTCATAAAGAGTTTGTGCAGATTGACCACAATGATCTATTCCCTTATCTTCTTGTTAACATTGGCTCTGGTGTTAGCATGATTAAGGTTGATGGGGATGGGAAGTTTCAGCGGGTTAGTGGGACAAATGTTGGTGGTGGTACTTATTGGGGCTTGGGAAGGCTATTAACAAAGTGTAAAAGTTTTGATGATTTGCTGGAACTAAGTCAACGAGGAGATAATAGGACCATTGACATGCTTGTTGGGGACATCTATGGTGGCATGGATTACTCAAAAATCGGTCTCTCTGCCTCGACCATTGCCTCTAGTTTTGGCAAGACAATTTCTGAAAACAAGGAGCTAGAAGACTACAGGCCTGAAGATATCTCCCTCTCCCTCTTGCGTATGATTTCATATAATATAGGGCAGATATCTTACTTGAATGCACTTCGGTTTGGGCTTAAGAGAATCTTTTTTGGAGGATTTTTCATAAGAGGTCATGCTTATACAATGGATACGATCTCCTTTGCTGTTCAGTTCTGGTCAAATGGGGATGCCCAGGCAATGTTTTTGCGGCATGAAGGATTCTTAGGAGCTTTAGGTGCATTCATGAGCTATGAGAAGCATGGTCTCGATGACTTGATGGTCCATCAGTTAGTTGAAAGGTTCCCAATGGGAGCACCATACATAGGAGGAAGGATTCATGGTCCACCACTTGGGGATTTGAATGAAAAGGCAATTTTTCATGCCTCTAAGTTCACTTTGTTTATAAATAAACTGGGTTCAGGGTTTGGCTTCCTAATTGATCAACCAGAAACCATCTCAGGAGCATGGTGCAGGTTGTTGGTCTTGACTTCTTGGTATTTTCTGACATGCTCAAGTTTAGGTCCTCACATGTTCTTCCCTCCAAGAAACTCTTTGGCTCACCATACATGGAGAATCCAGTGTGGAACAAATGCTTCTTACACTCCTGCAACTCAAGATTTAAGACATTTATTAAAGGTGAACGATGCTTATTCTAAAATTGACAAAAGGATAAAACAAGAAGTCTGGCTAATCGATGCACCACCCCGTGGTGAAACTAACCTAATTTCATGGATGGAAAAGTTTGTGCAGAAGGGAACTGAGATCACTGCTCCTGTACCAATGGCCCCATCTGGAACCACTGGCCTTGGAGGCTTTGAAGTTCCTTCATCAAAAGGAGACACCCTACGTTCTGATGCAAGTGCTTTAAATATTGGGGTGCTCCATCTTGTACCAACTTTGGAGGTCTTTCCATTATTAGCAGACCCAAAAATGTACGAGCCCAACACTATTGATCTTGCAGACCCCAGTGAACTGGAGTATTGGTTCACTGTGCTGTCAGAGCATTTGCCGGACCTTGTTGATAAGGCAGTGGCAAGTGAAGGTGGAACGGATGATGCTAAAAGAAGGGGTGATGCTTTTGCTCGTGCATTTTCTGCCCACCTGGCAAGATTGATGGAAGAGCCTGCTGCTTATGGAAAGTTGGGCCTGGCTAACCTTTTGGAACTAAGGGAAGAGTGCTTGAGAGAGTTCCATTTTGTTGACGCCTATAGAAGCATAAAACAAAGGGAAAATGAGGCTTCACTTGCTGTTTTGCCTGATCTTCTAATGGAGATTGATAGTATGAATGAGGAAACAAGGCTGCTTACCCTAATTGAAGGTGTTCTTGCTGCCAACATCTTTGACTGGGGATCCCGTGCCTGTGTGGATCTCTATCATAAAGGAACAATTATTGAAATTTATAGAATGAGTCGTAAAAAGATGCAAAGGCCTTGGCGGGTGGATGACTTTGACATCTTTGAGGAGAGAATGTTGGGGTCTGAAGACAAGAAGCCTCGCCCACATAAAAGGGCATTACTCTTTGTTGACAACTCAGGTGCTGATGTCATTCTAGGAATGCTTCCCCTAGCACGGGAACTTCTTAGACGTGGAACTGAGGTAGTATTGGTTGCAAACTCCCTTCCTGCACTAAATGATGTCACTGCAATGGAGCTTCCTGACATTGTGGCTGAGGCTGCCAAGCATTGTGACATTCTCCGTAGAGCTGCTGAAGCAGGAGGTCTACTTGTGGATGCAATGGTCAACATCCAAGACGGTTCTAAAGATAGTTTGTCTTCAGTTCCTTTGATGGTTGTTGAGAATGGGTGTGGAAGTCCTTGCATAGACTTAAGGCAGGTCAGCTCTGAGCTAGCTGCTGCAGCAAAAGAGGCTGATTTGATTATCTTGGAAGGGATGGGCCGAGCTCTTCATACCAACTTCAATGCTCGGTTTAAATGTGATGCTCTCAAGCTTGCAATGGTGAAGAATCAGAGGTTGGCAGAAAAATTGATCAAAGGAAACATTTATGACTGCGTTTGCCGATATGAACCAGCCCCTTGA 2967 43.92 MVLPAGNSIHRSGSRPQLDLSGAAIQGNNFEERHPTILLPNQSDDISHLALDIGGSLIKLVYFSRHEDRSIDDKRKRSIKERLGVTNGNRRSYPILGGRLHFVKFETSKINECLDFINSKQLHRGGMDSRLWLSEAPPSDDVIIKATGGGAHKFADLFKERLGVSIDKEDEMDCLVAGANFLLKAIRHEAFTHMEGHKEFVQIDHNDLFPYLLVNIGSGVSMIKVDGDGKFQRVSGTNVGGGTYWGLGRLLTKCKSFDDLLELSQRGDNRTIDMLVGDIYGGMDYSKIGLSASTIASSFGKTISENKELEDYRPEDISLSLLRMISYNIGQISYLNALRFGLKRIFFGGFFIRGHAYTMDTISFAVQFWSNGDAQAMFLRHEGFLGALGAFMSYEKHGLDDLMVHQLVERFPMGAPYIGGRIHGPPLGDLNEKAIFHASKFTLFINKLGSGFGFLIDQPETISGAWCRLLVLTSWYFLTCSSLGPHMFFPPRNSLAHHTWRIQCGTNASYTPATQDLRHLLKVNDAYSKIDKRIKQEVWLIDAPPRGETNLISWMEKFVQKGTEITAPVPMAPSGTTGLGGFEVPSSKGDTLRSDASALNIGVLHLVPTLEVFPLLADPKMYEPNTIDLADPSELEYWFTVLSEHLPDLVDKAVASEGGTDDAKRRGDAFARAFSAHLARLMEEPAAYGKLGLANLLELREECLREFHFVDAYRSIKQRENEASLAVLPDLLMEIDSMNEETRLLTLIEGVLAANIFDWGSRACVDLYHKGTIIEIYRMSRKKMQRPWRVDDFDIFEERMLGSEDKKPRPHKRALLFVDNSGADVILGMLPLARELLRRGTEVVLVANSLPALNDVTAMELPDIVAEAAKHCDILRRAAEAGGLLVDAMVNIQDGSKDSLSSVPLMVVENGCGSPCIDLRQVSSELAAAAKEADLIILEGMGRALHTNFNARFKCDALKLAMVKNQRLAEKLIKGNIYDCVCRYEPAP* 989
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 9731584 9760223 - Vvi17g757 Vvi17g757 779454

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g757 988 Gene3D - 40 202 - -
Vvi17g757 988 Pfam Fumble 48 392 IPR004567 GO:0004594|GO:0005524|GO:0015937
Vvi17g757 988 MobiDBLite consensus disorder prediction 1 20 - -
Vvi17g757 988 TIGRFAM panK_eukar: pantothenate kinase 48 393 IPR004567 GO:0004594|GO:0005524|GO:0015937
Vvi17g757 988 SUPERFAMILY Actin-like ATPase domain 46 189 IPR043129 -
Vvi17g757 988 SUPERFAMILY AF1104-like 604 986 IPR036075 -
Vvi17g757 988 PANTHER PANTOTHENATE KINASE 2 576 910 - -
Vvi17g757 988 PANTHER PANTOTHENATE KINASE 2 6 427 - -
Vvi17g757 988 Pfam Damage-control phosphatase ARMT1-like domain 695 974 IPR002791 -
Vvi17g757 988 Gene3D - 623 710 IPR035073 -
Vvi17g757 988 Gene3D - 271 383 - -
Vvi17g757 988 Gene3D Uncharacterised protein PF01937, DUF89, domain 3 789 986 - -
Vvi17g757 988 SUPERFAMILY Actin-like ATPase domain 161 394 IPR043129 -
Vvi17g757 988 PANTHER PANTOTHENATE KINASE 576 910 IPR004567 GO:0004594|GO:0005524|GO:0015937
Vvi17g757 988 PANTHER PANTOTHENATE KINASE 6 427 IPR004567 GO:0004594|GO:0005524|GO:0015937
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g757 K24265 PANK4; bifunctional damage-control phosphatase, subfamily II, fusion protein - vvi:100255260 860.522
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g684 Vvi17g757 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g757 Blo04g00734 . . . . . . . . Cmo18g00128 . . . . . . . . . . . . . . . . . . . . . . Cone16ag0101 Cone13ag0142 . Lsi02g00371 Csa01g00852 Chy12g01267 Cme12g01694 . . . Bda14g00811 . Bpe15g00638 Bma03g00781 . . . . . Cma18g00170 . Car18g00161 Cpe09g01025 . Bhi08g01609 Tan05g2008 . Lac10g0449 Hepe07g2227 . . Cla01g01300 Cam01g1429 Cec01g1464 Cco01g1460 Clacu01g1366 Cmu01g1272 Cre01g1264 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005817 1 5 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 3 1 39