Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g763 ATGTATAAAATTTTAAAAATTTCACTTTACACATTCGGAATCCAAAGGCTCCATAAGCGCGAATTCAATAGCCCCAACACTTCCGACAACGCCTTCCTTGTCAAGCCCTTGTGGTTGCTCGCCACCATGCCTTGTATAATCTCCGCGGTCTCCACCGCCAACTCTTCTCCCAAGACGTCTCTGTTATTGTCCTTCGCCTTTGCTTCTTCGCACCCATCACACATTATCAGGGCGTGGCTCTCCTGGGCGGGTGCAATGCCAACGTCATCAAAAAATTCGAGAAAGGGAAGGGAAATGCATGCATTGAGTTTCAAAGGGTTTCCCGATTTGAACGTTGGCAGGGAGCGCTCTTGGCCTGGCCGACTGTACCATTGTACAGGGACGAGAAAGGATGGTTGGAATTGTAGGGATTTTAGGAGAAATTGCAGGATTTTTGCTTGTTCTTCGGGGGCAAATGGGGAGAATCAGAGCCCGAGTTCGTTTCTTTCTCGCAGTCAAACTTACGCTCTTCTGAAGCAGCAACTGCAGGTTGCTGCAAAATCTGAGGATTACAAAGAAGCTGCTAGACTACGCGATTCATTGAGATTATTTGAGGAAGAGGAGCCGGTTTTGCGTCTTCGCAGATTGATTAAAGAGGCAGTCGCCGATGAGAGGTTTGAGGATGCAGCTAGATACCGTGATGAGCTTAAGGAAATTGCACCGCATTCTCTCTTAAAATGTTCAAGTGACGCAACAACCGTGGGGATCAGGGTTCAAGTTAGAAGTGTGTACATTGAAGGTCGAAGTCAGCCTTCAAAAGGGCAGTTCTTTTTTGCGTATAGAATAAGAATTACCAATAACTCAGACCGCCCTGTTCAACTTCTCAGAAGGCATTGGATTATAACAGATGCAAATGGAAAAATTGAGCATGTCTGGGGGATTGGTGTCATAGGTGAACAGCCAGTTATACTTCCTAGAACCGGTTTTGAGTACTCATCTGCATGCCCATTAAGCACTCCAAATGGAAGAATGGAGGGTGACTTTGAAATGAAACATATTGACAAAGTGGGTTCTCAGACTTTCAATGTGGCAATTGCCCCATTTTCTCTCTCCACACTCGGAGATGAGTCTGATACATTTGAGATGTGA 1128 45.66 MYKILKISLYTFGIQRLHKREFNSPNTSDNAFLVKPLWLLATMPCIISAVSTANSSPKTSLLLSFAFASSHPSHIIRAWLSWAGAMPTSSKNSRKGREMHALSFKGFPDLNVGRERSWPGRLYHCTGTRKDGWNCRDFRRNCRIFACSSGANGENQSPSSFLSRSQTYALLKQQLQVAAKSEDYKEAARLRDSLRLFEEEEPVLRLRRLIKEAVADERFEDAARYRDELKEIAPHSLLKCSSDATTVGIRVQVRSVYIEGRSQPSKGQFFFAYRIRITNNSDRPVQLLRRHWIITDANGKIEHVWGIGVIGEQPVILPRTGFEYSSACPLSTPNGRMEGDFEMKHIDKVGSQTFNVAIAPFSLSTLGDESDTFEM* 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 9879459 9885641 + Vvi17g763 Vvi17g763 779460

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g763 375 Pfam ApaG domain 261 344 IPR007474 -
Vvi17g763 375 Gene3D ApaG domain 239 370 IPR036767 -
Vvi17g763 375 ProSiteProfiles UVR domain profile. 165 200 IPR001943 GO:0005515
Vvi17g763 375 ProSiteProfiles UVR domain profile. 200 235 IPR001943 GO:0005515
Vvi17g763 375 PANTHER OS05G0170800 PROTEIN 99 372 - -
Vvi17g763 375 Pfam UvrB/uvrC motif 205 232 IPR001943 GO:0005515
Vvi17g763 375 ProSiteProfiles ApaG domain profile. 243 370 IPR007474 -
Vvi17g763 375 SUPERFAMILY ApaG-like 245 364 IPR036767 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g763 - - - vvi:100267315 559.681
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g763 Blo04g00731 Blo16g00226 . . . Bpe13g00244 Bma06g00216 . Cmo13g00913 Cmo18g00131 . . . . . Cpe20g00247 . . . . . . . . . . . . . . . Cone2ag0911 Cone16ag0097 . . Lsi02g00378 Csa01g00857 Chy12g01263 Cme12g01689 . . Bda11g01657 Bda14g00808 . Bpe15g00640 . . Sed08g2516 . . Cma13g00884 Cma18g00173 Car13g00724 Car18g00164 Cpe09g01022 . Bhi08g01618 Tan05g2002 Cmetu12g1934 Lac10g0456 Hepe07g2222 . . Cla01g01304 Cam01g1426 Cec01g1459 . . Cmu01g1276 Cre01g1261 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010271 2 1 2 1 2 0 2 0 0 0 1 0 2 1 0 2 1 2 2 0 1 0 1 1 1 1 1 1 1 1 30