Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g767 ATGGACACCGTGCACCGCCTCAAGTCGACGGAGCCGCCGCTATGGCTCTCACCGAGTTCCGAACTCTCGCAAACGGCTCGTGCAGCTTCACAGCACCTTTTCGCTTCTCTAAAACCATTTGCTCCCAAATCGCCCTTTGATCGCCTCCTCGTCGACGGATTCGACGCCGAGCAAATTTGGCAGCAGATTGACATCCAATCTCAGCCTATTATCTCCAGCCTCCGCCGCCAGATCAATCGGTTTGAGAAGAATCCGGAGGAAATTTCGAAGATTTTTGATGACGAGCTTGGAGCTTTTGACCTTGATGATGGGGAAAACGAAGGCATGGATGAATTGGATGATATTAAGCTTGTAGATGAAACACAAACACACTCAACTCTTATGCATTTTAGTGTTGCTTGCATTAATAAAAGAAATAGCAATAACGGTAAAAAGTTGGAATGCCACAGGGTGGTGCAATTGAGTAATGTGGTGGTTTTCCTGAATCATGATGATGGTGAGTTTGCAGTGTGGGCTGTAGAATATGAAGATTTCTTTGGTCCTAAAAGGAAAGTTTCAAAAAAATCCAAATTGACTGATGGGTTGGAAGACTCCGACAGAAGTGATGAACAAGAAGATGATCAGGCAACTGATAATAAGAACAAAGTTCTTTCTACCCATGAGAAAGAGCGTGAGAATGTTCGAGCAAAGATAGAGGAGATGGAGAGAGCAAATTTGGAGTCAAAAACTTGGACCATGCAGGGAGAGGTAACTGCTGCTAAAAGGCCAAAGAATAGTGCTTTAGAAGTTGATCTAGATTTTGAGCACAATGTGAGACCTCCTCCTGTAATCACAGAGGAGGTTACAGCATCCCTTGAAGATTTGATCCAAAAAAGAATCCTTGAGGGTCGTTTTGATGATGTTCAAAAGGCTCCACGTCTACCGTCTAAGGCACCGAAAGAAGTTAAAGAGATGGATGAAAATAAGAGCAAGAAGGGTCTTGCTGAGATTTATGAGGAAGAATTTGTTCAGAAGACGAATTTGGATTCTGCCCCATTGTCCTTCTCAGATGAACAAAGGAAAGAGGCAAGCATGCTGTTCAAGAAACTTTGCTTGAAGTTGGATGCTCTCTCGCATTTCCACTTCACTCCAAAACCTGTTATAGATGACATGTCTATACAAACAAATGTACCTGCTCTTGCAATGGAAGAGATTGCACCTTTGGCAGTTTCAGATGCAGCTATGCTGGCTCCTGAAGAAGTCTTTGAAGGCAAAGGAGACATTAAGGAAGAAGCAGAGTTAACACAGGCAGAGAGGAAGAGGAGGAGAGCAAACAAGAAGAGGAAATTTAAAGCCAACACAACAAAAAGAGCTGCAAAGAAGGCACAGGACGGCACATTGCAAAACAATAAAGAGGGCAAAGAAGAAGCATGA 1413 43.52 MDTVHRLKSTEPPLWLSPSSELSQTARAASQHLFASLKPFAPKSPFDRLLVDGFDAEQIWQQIDIQSQPIISSLRRQINRFEKNPEEISKIFDDELGAFDLDDGENEGMDELDDIKLVDETQTHSTLMHFSVACINKRNSNNGKKLECHRVVQLSNVVVFLNHDDGEFAVWAVEYEDFFGPKRKVSKKSKLTDGLEDSDRSDEQEDDQATDNKNKVLSTHEKERENVRAKIEEMERANLESKTWTMQGEVTAAKRPKNSALEVDLDFEHNVRPPPVITEEVTASLEDLIQKRILEGRFDDVQKAPRLPSKAPKEVKEMDENKSKKGLAEIYEEEFVQKTNLDSAPLSFSDEQRKEASMLFKKLCLKLDALSHFHFTPKPVIDDMSIQTNVPALAMEEIAPLAVSDAAMLAPEEVFEGKGDIKEEAELTQAERKRRRANKKRKFKANTTKRAAKKAQDGTLQNNKEGKEEA* 471
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 9907477 9915574 + Vvi17g767 Vvi17g767 779464

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g767 470 MobiDBLite consensus disorder prediction 425 470 - -
Vvi17g767 470 MobiDBLite consensus disorder prediction 189 226 - -
Vvi17g767 470 Pfam Mpp10 protein 16 113 IPR012173 GO:0005634|GO:0005732|GO:0006364|GO:0034457
Vvi17g767 470 Pfam Mpp10 protein 188 450 IPR012173 GO:0005634|GO:0005732|GO:0006364|GO:0034457
Vvi17g767 470 MobiDBLite consensus disorder prediction 434 449 - -
Vvi17g767 470 Coils Coil 420 447 - -
Vvi17g767 470 MobiDBLite consensus disorder prediction 206 226 - -
Vvi17g767 470 Coils Coil 217 242 - -
Vvi17g767 470 PANTHER U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN PROTEIN MPP10 4 116 IPR012173 GO:0005634|GO:0005732|GO:0006364|GO:0034457
Vvi17g767 470 PANTHER U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN PROTEIN MPP10 167 468 IPR012173 GO:0005634|GO:0005732|GO:0006364|GO:0034457
Vvi17g767 470 PIRSF snoRNP_Mpp10 6 128 IPR012173 GO:0005634|GO:0005732|GO:0006364|GO:0034457
Vvi17g767 470 PIRSF snoRNP_Mpp10 171 470 IPR012173 GO:0005634|GO:0005732|GO:0006364|GO:0034457
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g767 K14559 MPP10; U3 small nucleolar RNA-associated protein MPP10 - vvi:100241507 679.863
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g767 . . . Bda15g00553 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0146 . . . . . . . . . . . . Bma08g00098 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010218 1 5 0 1 1 0 1 0 1 1 1 0 1 1 1 1 1 1 1 0 1 1 1 1 2 1 1 1 3 1 32