Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g772 ATGCTATATCGCATGGATGTGGCGCATTGCTACCTGGAAGGCAACGCCGATGCGGTGGAGTTTTGCCCACACGACTCCTACCACCATGTTTTAGCGGCTTCAACGTATACGCTGCAAGAGGGTGATCAGCCTAGTAGATCAGGAAGCGTTTCACTGTTCAATATTGATGCTGAGTTCGGGCGTCTTGAATTGGGTCATCGTGTGGACACGGCTGGGATTTTTGATATAAAGTGGAGCCCAGCTGGAAGCACTGCTGTTCCTTCGTTAGCTCAAGCTGATGCTGATGGGTACTTGAGACTCTATGGTTTGGAAAGCGGTTCAAGTGGAGCCGAAGCTCTGGGGGGTTCTTTGACAGAAATCAATGCTGAAAAAATAAGTTCTTCCATGTGCCTTTTCCTGGACTGGAATCCCTCGGCAACATGCATCTCTGTGGGCCTCTCAGATGGTTCTATCTCAATAATTTCCCTGAGAGAGTCCCAATTAGATATATGTCAAGAATGGAAAGCACATGAATTTGAGCTTTGGTCAACTTCCTTTGATATCCATCAGCCACAACTGGTGTACACAGGCTCTGATGACTGTAAATTCAGCTGTTGGGATTTGCGGGATAGTCCTTCAAAGTTGGCATTTCAGAATTCCAAGGTCCATAAGATGGGTGTTTGTTGCATTGCAAAGAGCCCCAGTGACCCTAATTTAGTTCTCACTGGCAGCTATGATGAGCACCTGAGACTATGGGATGTGAGATCAATAATCAAGCCTGTTAATGAAACTTCAATTTGTCTAGGGGGAGGAGTCTGGAGAATCAAGCACCATCCCTCAGTACCAGGTCTGGTCCTGGCAGCTTGTATGCACAATGGGTTTGCAGTTGTCAAGACCAAAGGTGAGGAACCTGAAGTTATTGAAACTTACAGTAAGCATGAATCACTTGCATATGGAGCAGATTGGCAGAGAGGGGACTTAGCGAAATTTGGGGTTTGTTCTGAAATGGGTTTGAGCAGGTATTCATGGGTGGTTTTGCTTTGTTGGGTATTTTTACTTTTATGTTTAAGAAGTGGATGTGATGGTTCAGAGGTGTCTGTGAACTTCTTGACGGCTCCTCTTGCATTCTCACGGCTGAACTCAGCCACATTTGTGTTTGAAGTTTTGGTGGGTGGGAATAATGATCCCTGCAATGACTGCATATTCAATTGCAAGTTGGATAATGGTACTCCTTCGGATTGTCAAGCAAAGAAAGTTTCTTACACAGGCTTACTGGATGGGAATCATACATTTGAGGTCTGCACCAATGGATCTCAAGGAGTTGGCTGTGCTAGCTATGGCTGGACTGTTGACACAGTCCCTCCTACAGCATATGTTACAGCATCGACATCATTTACAAATGCTCTAAACTTTTCTGTAAATATTTCTTTTAGTGAACCCTGTACAGTTGGAGGCAGTTTTGGATGTTCCTCTGTGAATGCCTGCAACCTTCTTGTATATGGTGCTGGCCAAGTTATACCATCCACATTCAACGTTCTTCAGCCAAACCTCAAGTTTTCTGTTCTTGTGGGTTTATCTTATAGTGTTCCGTATGGACGGGTGATACTGGTAATGGACAAGAGTTTCTGTGCTGACAGTGCCAGAAACAAATTTATGAGAACAGAAAATTCAAGCTTACTCGTGCATTTTGACATAAGAAGTGTGTTTGTCAACCTGAGGACTCATGTTCCCGAAAAGCTACTTGAACTTAACAGTGAAACTAGAACAGTGCAAGCAACTAATAATTATAAGAATTTAAAGGTGTATTTATATTTCTCAGAACCTGTTCTCAACTCATCAACAGAAGTTTTGAGTTCTCTCAATACAAGCCAGGGTGTGCTTCTTCCTAATGGTGGAAGGAGCCTTGGAAATCGCAGATTTGGCTTTCTGGTTGAGAATGTATCAAGTGTTGCTATAGTCACAATAAGCTTTGATTCCTCTGCTATCATAAGCAGACAAGGGACCCCAGTTTCTCCAATTGCTCCAGTTACTTTTCTTTATGATTCTCAGAGACCTATTGTGAGGTTGAGTACAACATCCAATATGCGAACAAGAGAACATACTATCCCGATATTGATAAAGTTCTTGAAGCCTGTTTTTGGTTTCAACTCTTCTCATATATCAATCTCAGGAGGACAATTGCAGAGGCAAGTGATTAGTTGTTCCCAAACTCAAGCATACATCTTTAATGCAATAAGTAGAAGCATATATACTGCAGAGATAAAAGCAGATCATGATGTTGTATCCGTCAATGTACCGGAAAACATAACAGGGGATGTTGCTGGAAACCAAAATCTAGCATCAAATATCCTACAAGTGAGGCACTATTCTGTGCCAATAACGTCTTGTGTAATTTCCACCTTTACAACTGCTTCTTTTGTGGCAACATCCTTGGCTGCGGGGTGGCTCACTGTTTCAACTGCAAGCCTTCAATCTGTTGGGGCATTTTTGAGACCACGTTCTTATTTGGTGTCTGATCCTGCAAGGAATCTTTTTAGAATTGCATCCCACATTCAGGTTTTTGCACTGTCTAGATGGTTGCCAGTTACCCTGCCAGTCGAGTACTACGAGTTTGCCAGGGGAATACAGTGGAGTATCCCCTACTTCAGTCTCCCATGGGAAACCGGGCACATTCATCCCATTATGGTGGGGTCAAGCTCCCCCACTCTCTCACATTTATATGCTTCTAGAATTCATGATTCAGGATTTTTTGAGACTGTGCAACCAGAAGAAGATAATTTGGATAGGGCTGCTTCTGTATATGGGCTCCCACTGACTCCAATGGAATACAGAACATTTTTTGAGAACCATAACTTTAAACCAGAAGCTGAGTATATTTCGGATCCACAAAATTCAAATGGGCGGAGGGATTTCAATAGAAGCATGTTCTGGTTAGCTGTAATTGGTGGCAGCTTGATACTATTGCATGCTTTACTCGTCCTTGTTTTGAAAATCAGGAAGAAAAGCTCAGAAAAACAGGGGAGTTATGGAGCACTCGTATTCCCAAGATTTGAAATATTTCTGATAATTCTCGTGTTACCTTGTATCTGTGAAGCATCAGCCTCTCTAGTTAAAGGAGGAACAACTTCAGCAGTTGTAGTTGGCATTCTGCTGTTTGGTGTTGTAGCTTTTGTACTGCTAGCCTTATTCTTGTTCCTTTCGGTTGGAATATCATTTGGGAAGCTGCTTCTGTACAAGGAACCTTTCATCAAGAAAAAGGTTCAACTAGTTGAGATCATCTCAGTTTCCACTGAAGTGGCTATTTTTGCTTCTTGTTTGGTTCTATTAGAGATGGAATTTCCAGCAGGGGCCGAGAAAAAAATTGCAATATTCATGCTTTTACTGTTCTTGGTAGGATATGTGGCACAGATGATCAATGAGTGGTATGCCTTGTATCGACAGGCAAAGCGACTGGACCCTGCAGAAAGCTCATTCCTATCGGGTTTGAAAACAGCTTTGATCGGATTTCTCCTGTTTTTCATTCCATTGAAAATCATTGAGAAACTAGGCTGGTTCCCAGTAAATCAACCTGGTGATGGAGAGACTGGGGATGCTACTTCTTCAGCTGACAGGTCCAAGAGCTCTGGAAGTGGGACCGTGCGTACATCAGATAGGCCATGGTTGAAACAACTAAGAGAACTGGCAAAAGCTAGCTTTAGTAAAGAAGGAAGTGGGGTTCCAACTGATCCTTCAACCAGTCAATCCAGATGGAGTATCCTGCTATTCATTCTTTTCTGTTTGCAAGTGTAA 3768 42.78 MLYRMDVAHCYLEGNADAVEFCPHDSYHHVLAASTYTLQEGDQPSRSGSVSLFNIDAEFGRLELGHRVDTAGIFDIKWSPAGSTAVPSLAQADADGYLRLYGLESGSSGAEALGGSLTEINAEKISSSMCLFLDWNPSATCISVGLSDGSISIISLRESQLDICQEWKAHEFELWSTSFDIHQPQLVYTGSDDCKFSCWDLRDSPSKLAFQNSKVHKMGVCCIAKSPSDPNLVLTGSYDEHLRLWDVRSIIKPVNETSICLGGGVWRIKHHPSVPGLVLAACMHNGFAVVKTKGEEPEVIETYSKHESLAYGADWQRGDLAKFGVCSEMGLSRYSWVVLLCWVFLLLCLRSGCDGSEVSVNFLTAPLAFSRLNSATFVFEVLVGGNNDPCNDCIFNCKLDNGTPSDCQAKKVSYTGLLDGNHTFEVCTNGSQGVGCASYGWTVDTVPPTAYVTASTSFTNALNFSVNISFSEPCTVGGSFGCSSVNACNLLVYGAGQVIPSTFNVLQPNLKFSVLVGLSYSVPYGRVILVMDKSFCADSARNKFMRTENSSLLVHFDIRSVFVNLRTHVPEKLLELNSETRTVQATNNYKNLKVYLYFSEPVLNSSTEVLSSLNTSQGVLLPNGGRSLGNRRFGFLVENVSSVAIVTISFDSSAIISRQGTPVSPIAPVTFLYDSQRPIVRLSTTSNMRTREHTIPILIKFLKPVFGFNSSHISISGGQLQRQVISCSQTQAYIFNAISRSIYTAEIKADHDVVSVNVPENITGDVAGNQNLASNILQVRHYSVPITSCVISTFTTASFVATSLAAGWLTVSTASLQSVGAFLRPRSYLVSDPARNLFRIASHIQVFALSRWLPVTLPVEYYEFARGIQWSIPYFSLPWETGHIHPIMVGSSSPTLSHLYASRIHDSGFFETVQPEEDNLDRAASVYGLPLTPMEYRTFFENHNFKPEAEYISDPQNSNGRRDFNRSMFWLAVIGGSLILLHALLVLVLKIRKKSSEKQGSYGALVFPRFEIFLIILVLPCICEASASLVKGGTTSAVVVGILLFGVVAFVLLALFLFLSVGISFGKLLLYKEPFIKKKVQLVEIISVSTEVAIFASCLVLLEMEFPAGAEKKIAIFMLLLFLVGYVAQMINEWYALYRQAKRLDPAESSFLSGLKTALIGFLLFFIPLKIIEKLGWFPVNQPGDGETGDATSSADRSKSSGSGTVRTSDRPWLKQLRELAKASFSKEGSGVPTDPSTSQSRWSILLFILFCLQV* 1256
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 9949637 9964293 - Vvi17g772 Vvi17g772 779469

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g772 1255 SUPERFAMILY WD40 repeat-like 47 315 IPR036322 GO:0005515
Vvi17g772 1255 ProSitePatterns Trp-Asp (WD) repeats signature. 233 247 IPR019775 -
Vvi17g772 1255 MobiDBLite consensus disorder prediction 1186 1208 - -
Vvi17g772 1255 SMART WD40_4 206 246 IPR001680 GO:0005515
Vvi17g772 1255 SMART WD40_4 116 155 IPR001680 GO:0005515
Vvi17g772 1255 SMART WD40_4 160 200 IPR001680 GO:0005515
Vvi17g772 1255 Pfam WD domain, G-beta repeat 216 246 IPR001680 GO:0005515
Vvi17g772 1255 Gene3D - 12 330 IPR015943 GO:0005515
Vvi17g772 1255 PANTHER TRANSMEMBRANE PROTEIN 329 1073 - -
Vvi17g772 1255 PANTHER TRANSMEMBRANE PROTEIN 1072 1245 - -
Vvi17g772 1255 ProSiteProfiles Trp-Asp (WD) repeats profile. 213 249 IPR001680 GO:0005515
Vvi17g772 1255 PANTHER - 1072 1245 - -
Vvi17g772 1255 PANTHER - 329 1073 - -
Vvi17g772 1255 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 213 249 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g772 - - - vvi:100257111 1383.62
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g772 . . . Bda15g00551 . . . . Cmo13g00910 Cmo18g00136 . Cma11g00091 . Car11g00083 Sed14g0033 Cpe20g00250 Cpe04g01563 Bhi02g00606 Tan09g2439 Cmetu02g1402 . . . . Cla06g01667 Cam06g1852 Cec06g1904 Cco06g1909 Clacu06g1811 Cmu06g1752 Cre06g2571 . . . . Lsi02g00383 Csa01g00863 Chy12g01259 Cme12g01683 . . . . . . . Bma08g00096 . . Cmo11g00090 Cma13g00879 Cma18g00178 Car13g00719 Car18g00169 Cpe09g01017 . Bhi08g01627 . . Lac10g0461 . . . Cla01g01310 Cam01g1420 . Cco01g1470 Clacu01g1375 Cmu01g1283 Cre01g1256 Lsi06g01560 Csa01g00144 Chy02g02585 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006737 0 7 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 1 1 38