Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g773 ATGGACCAACTGTACGGCCTCCACTCTCCCTCCTCCTCCGATTACCACCACCCGCCTCCATTTCCGCCGGAAAATCTGATTTCTCCGTCTCACTACCCGAATTTTAATTCTCCCGCGCCTTTTCCGATCTTCGGATCCGACCAGCTGTTGTCGGCGTCGTCTTTGGTGGTCTCTGATGCAGCTTCCATGGTGGCTGAAATTCAAGGAGGAGGTTCTGGAGAGGAGGTTTCCAGTGCTATTCGAGCCAAAATCGCTACTCATCCTCTCTATCCTAAACTTCTCCATGCTTACATCGAGTGCCAGAAGGTCGGAGCGCCACCGGAGGTTGCGTATCTGTTGGAAGAAATCCGGAGAGGAAGCGAGCTTTGCAGAAGAAACGCCGTTTCCACTTGCTTGGGTGCGGATCCCGAGCTGGATGAGTTCATGGAAACCTACTGCGATATACTGGTGAAATATAAATCGGATCTCGCCAGGCCTTTCGATGAAGCCACCGCGTTTCTGAACAACATAGAGACGCAGCTCAATACACTCTGCAATGGTGCTTCCAGAAGCTACGTTTCCGACGAAGCAGCTGGGTCATCAGAGGAGGACTTAAGTGGAGGAGAGGTGGAGGTACAAGAATGTCTTCAAACTACTGAAAATCAGGAGCTTAAGGATAAGCTATTGCGGAAATATAGTGGCTATATCAGTACCCTGAAGCATGAATTTTCGAAGACAAAGAAGAAGGGAAAGCTACCAAAGGAAGCAAGGCAAGCCCTTCTTGATTGGTGGAATATTCACTATAAATGGCCATATCCAACGGAGGAAGACAAGATCGCACTGGCTGAATCAACAGGCCTGGACCAGAAGCAGATAAACAACTGGTTCATAAACCAACGTAAACGGCACTGGAAGCCATCGGAGAACATGCAATTTGCTGTTATGGACAGTATTTATGGACCATTTTTCATGAATGAGTGA 960 48.54 MDQLYGLHSPSSSDYHHPPPFPPENLISPSHYPNFNSPAPFPIFGSDQLLSASSLVVSDAASMVAEIQGGGSGEEVSSAIRAKIATHPLYPKLLHAYIECQKVGAPPEVAYLLEEIRRGSELCRRNAVSTCLGADPELDEFMETYCDILVKYKSDLARPFDEATAFLNNIETQLNTLCNGASRSYVSDEAAGSSEEDLSGGEVEVQECLQTTENQELKDKLLRKYSGYISTLKHEFSKTKKKGKLPKEARQALLDWWNIHYKWPYPTEEDKIALAESTGLDQKQINNWFINQRKRHWKPSENMQFAVMDSIYGPFFMNE* 320
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 9989634 10000315 + Vvi17g773 Vvi17g773 779470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g773 319 ProSiteProfiles ELK domain profile. 216 236 IPR005539 GO:0003677
Vvi17g773 319 SMART ELK_2 216 237 IPR005539 GO:0003677
Vvi17g773 319 SMART KNOX1_2 78 122 IPR005540 GO:0003677|GO:0005634
Vvi17g773 319 Gene3D - 234 307 - -
Vvi17g773 319 MobiDBLite consensus disorder prediction 1 23 - -
Vvi17g773 319 Pfam KNOX2 domain 132 178 IPR005541 GO:0003677|GO:0005634
Vvi17g773 319 CDD homeodomain 248 300 IPR001356 GO:0003677
Vvi17g773 319 Pfam Homeobox KN domain 256 295 IPR008422 GO:0003677|GO:0006355
Vvi17g773 319 SMART KNOX2_2 128 179 IPR005541 GO:0003677|GO:0005634
Vvi17g773 319 ProSiteProfiles 'Homeobox' domain profile. 236 299 IPR001356 GO:0003677
Vvi17g773 319 Pfam KNOX1 domain 79 120 IPR005540 GO:0003677|GO:0005634
Vvi17g773 319 PANTHER ELK DOMAIN, HOMEOBOX KN DOMAIN, HOMEODOMAIN-LIKE PROTEIN-RELATED 1 319 - -
Vvi17g773 319 SMART HOX_1 238 303 IPR001356 GO:0003677
Vvi17g773 319 Pfam ELK domain 216 237 IPR005539 GO:0003677
Vvi17g773 319 ProSitePatterns 'Homeobox' domain signature. 274 297 IPR017970 GO:0000981|GO:0006355
Vvi17g773 319 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 319 - -
Vvi17g773 319 SUPERFAMILY Homeodomain-like 238 313 IPR009057 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi1g659 Vvi17g773 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14234 PF03791 KNOX2 4.10E-25 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g773 - - vvi:100243290 631.713