Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g774 ATGTTGTTGTTCTCTCTGTCCCTCTCCGATCCTCGAATCTCCCAAGCAGGCCTACTTTGTGGAGACACAAAGTCGGCCCCATCCATCTACATCCCAAATTTCATTCAAGTCATGGAAGCTATCGCCAAAAGTATGGTGCAACAAGGCTGGGGATATGCCAACATCACAAAAAGTCCTGTGATTTTCGGGTTATCCCAATGCTACAGTGATCTCTCAAAGGATGATTGCCTCTCCTGCTTTGCTGAGAGCCGCACCAAGCTCCCCAGATGCCTTCCTGCCATTGCAGCTCGAATATATCTTGATGGTTGCTTCCTTCGCTATGACAATTACAGCTTCTTCAACGAGAGCATTGACCCGAATCATGATATGGTTAGGTGCAGTGAGCCAAGTGGCGTTCTCAAGGATAATTACACGAGATCGGAGTTCTCGAAGAAAGTTGATGAAGTGATCAATAACGTAACTAAAACAGCTGTGCAGAAGCAGGGTTTTGCGGTGGCAGGGATGAAAGGAGGAGCGGTTGTGGCCTATGCATTGGCACAGTGTTGGAAGACAGTTGATCAGAAGGGGTGTAGAGATTGCTTGGTGAATGCTGAGTCTGCAGTGAGAAGGTGTCTGCCTGGTTCCGAGGGGAGGGCTCTGAATGCTGGCTGTTATTTGAGGTATTCTACTGAGAAATTTTACAATGACGGCACAGCAAAAAAGAGTGGTAAAGGATTGTCTGACACTGGGATGATCATCGCATTCATTTTATCAGTACTCGCGGTTTGCTTGCTCGCTTTCCTTGGTGCTTTTGTTGGCTACATACTCTTATCAAAGAGAAAAAGAAACAACAATAATGCTCTTGCTCGGATTCCAACATGTATAAACAGGTCTGACCTGAATTTCAAGTATGAAACACTTGAGAGGGCAACTAATTTTTTTGATTCTTCAAGGAAGTTAGGCCAAGGGGGAGCAGGATCTGTATTCAAGGGGACTCTCCCTGATGGGAGAACTGTTGCTGTAAAGAGATTGTTCTTCAATACGCGTCAATGGGTGGATGAGTTCTTCAATGAAGTGAACTTGATCAGCAGAATTCAACACAAGAACCTTGTGGGACTTCTGGGTTGCAGTATAGAAGGTCCAGAGAGCCTTCTAGTTTATGAATATGTACCCAACAAGAGTGTTGATCAAATCCTTTTTGGTAAGAATCCAACTTCATGTCTAAGCTGGCAGCAGCGGTTTGAGATCATCGTCGGAACAGCTGAGGGGCTTGCGTATCTTCATGGAGGTTCTGAAGTGAAGATTATTCACAGAGACATAAAAGGCAGCAACATACTGCTTGATGAGAATCTTAATCCAAAGATTGCTGATTTTGGACTTGCAAGATGTGTGGCTCCTGATAAATCTCATGTTAGCACTGGAATTGCTGGGACACTGGGGTATATGGCACCTGAATATCTTGTTCGTGGGCAGTTATCAGAGAAAGCAGACGTTTATGCCTATGGTGTGCTGATTCTTGAGATTGTATGTGGTAGGAAGAACTGTATTTTTGTGCAGGGGTCAGACTCAGTTCTGCAAACAGTTTGGAAGCATTATAAATCAAATAGCGTTGTCCGATCTGTGGATCCCTCCTTGAAAGGTGATTTTCCACTGAATGAGGCAAGAAATGTGGTTCAGATTGGGCTGCTGTGCACGCAAGCTTCCTTTGCATTAAGGCCATCCATGTCCCAAGTAGTTCAGATGCTAACCGATCAAAACAGTGTGATTCCTGAACCTATGCAGCCTCCATTCCTGAATGCCAGTGTTCTAGACCCGAGCAATTCCCTCAAAAATTCTATTACCAGAAACTTGACTCCATCTTTTCACACAGCAACTGAACCACCATCCACTCATTCAAGCAATTCCTCTGCTATGGCTAGCCAGGAATCATACACTCCTTCAGCAATGGATGTATCAGGACCAAGGGGGAAATTCATATTTCAGCTTTTAGATTTTTATCATCATCTTGTTACACTACTTTTCCTGTCAGTTAGTTTGTTTTTTGTTGTTTTAGACATGAATGTATATCTCTTCCTTTTTGCCACTTCTTCATGTGTTCAACCATTTGTTTAA 2091 43.81 MLLFSLSLSDPRISQAGLLCGDTKSAPSIYIPNFIQVMEAIAKSMVQQGWGYANITKSPVIFGLSQCYSDLSKDDCLSCFAESRTKLPRCLPAIAARIYLDGCFLRYDNYSFFNESIDPNHDMVRCSEPSGVLKDNYTRSEFSKKVDEVINNVTKTAVQKQGFAVAGMKGGAVVAYALAQCWKTVDQKGCRDCLVNAESAVRRCLPGSEGRALNAGCYLRYSTEKFYNDGTAKKSGKGLSDTGMIIAFILSVLAVCLLAFLGAFVGYILLSKRKRNNNNALARIPTCINRSDLNFKYETLERATNFFDSSRKLGQGGAGSVFKGTLPDGRTVAVKRLFFNTRQWVDEFFNEVNLISRIQHKNLVGLLGCSIEGPESLLVYEYVPNKSVDQILFGKNPTSCLSWQQRFEIIVGTAEGLAYLHGGSEVKIIHRDIKGSNILLDENLNPKIADFGLARCVAPDKSHVSTGIAGTLGYMAPEYLVRGQLSEKADVYAYGVLILEIVCGRKNCIFVQGSDSVLQTVWKHYKSNSVVRSVDPSLKGDFPLNEARNVVQIGLLCTQASFALRPSMSQVVQMLTDQNSVIPEPMQPPFLNASVLDPSNSLKNSITRNLTPSFHTATEPPSTHSSNSSAMASQESYTPSAMDVSGPRGKFIFQLLDFYHHLVTLLFLSVSLFFVVLDMNVYLFLFATSSCVQPFV* 697
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 10011351 10014827 + Vvi17g774 Vvi17g774 779471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g774 696 ProSiteProfiles Protein kinase domain profile. 307 591 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g774 696 Pfam Protein kinase domain 308 573 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g774 696 SUPERFAMILY Protein kinase-like (PK-like) 294 602 IPR011009 -
Vvi17g774 696 ProSiteProfiles Gnk2-homologous domain profile. 12 112 IPR002902 -
Vvi17g774 696 ProSitePatterns Serine/Threonine protein kinases active-site signature. 428 440 IPR008271 GO:0004672|GO:0006468
Vvi17g774 696 Gene3D - 20 112 IPR038408 -
Vvi17g774 696 Gene3D - 131 226 IPR038408 -
Vvi17g774 696 Gene3D Phosphorylase Kinase; domain 1 268 382 - -
Vvi17g774 696 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 42 2 636 - -
Vvi17g774 696 CDD STKc_IRAK 313 576 - -
Vvi17g774 696 Pfam Salt stress response/antifungal 25 110 IPR002902 -
Vvi17g774 696 Pfam Salt stress response/antifungal 136 223 IPR002902 -
Vvi17g774 696 ProSiteProfiles Gnk2-homologous domain profile. 121 226 IPR002902 -
Vvi17g774 696 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 2 636 - -
Vvi17g774 696 SMART serkin_6 307 582 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g774 696 Gene3D Transferase(Phosphotransferase) domain 1 383 584 - -
Vvi17g774 696 MobiDBLite consensus disorder prediction 612 632 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi14g1326 Vvi17g774 ECH
Vvi1g653 Vvi17g774 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76329 PF00069 Pkinase 1.10E-44 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g774 - - vvi:100250205 1252.65