Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g775 ATGACTCTCACTACGGACTCTTCCTCTTCCTTGCAATGGAAGTTTTCTCAGGCTTTCGGCGAACGAGCTCCTGGAGAAGACGTTCAAGATATTGATATGATATCAGCAATGGAATTTGAGAAGAGTGGTGATTACCTGGCTGTTGGAGATCGAGGTGGTCGGGTTGTAGTATTTGAAAGGAAGGATGAGAAAGATTGGCATTCTCGAAATGAGTTGGAGCAATTGGATTTTACTACCATTCAGCATCCCATATTTCATTATAAGACTGAATTTCAGAGTCATGAGCCCGAGTTTGATTATTTAAGGAGCTTGGAAATTGAAGAGAAGATTAACAAAGTAAGATGGTGTGCAACACCCAACGAATCACTATTTATTCTTTCAACAAATGACAAGACAATTAAACTGTGGAAGGTAAAGGATCATAAGCCGAAGAAAGTAAAAGAATTGAACCCTAATCCATTCGTGCATTCGGAGAATGTGCTTTTGGCTGAAAGTAGTTTTGTGAGTGGGCAAGATAAACCATCTGTTGCTAATGGTTATGCTTTAGAGTGGACAGAAAAAATAGATAACATGTCCCCATCTCAAGACACGCATGCAAAGAGAGCTAATATTGGAGAGACTGTCTCTGCAAGATGTCGGAAGGTGTATGCTCATGCTCATGATTATAATATTAATTCTATCTCAAATAATAGTGATGGTGAGACATTTGTTTCTGCGGACGACCTTAGGATAAACTTGTGGAACCTGGAGATCAGTGATCAATGTTTTAATATCATTGACATGAAACCATCAAACATGGAAGATCTTACTGAGGTGATAACAGCAGCTGAGTTCCATCCAATTCACTGTAATCTGCTGGCATATAGCAGCTCAAGAGGTTTTATTCGGCTAGTTGACTTGCGACAGTCAGCAATATGTGATCACAATGCAAGAATATTACAACATGGAGAGTCCAGTGGGCTTAAATCGTTTTTTACAGAAATCGTCTCATCTATCTCAGACATTAAGTTTGCATCTGATGGAAGGCATCTCTTAAGTCGTGATTACATGAATCTAAAGCTATGGGATATACGCATGGAGACTTCACCAGTTGCAATTTTTAAGATTCATGAACATCTTCGCCCTAAGTTATGTGATTTGTACAATAATGATGCCATTTTCGATAAATTTGAGTGCTGCTTAAGTGGATATGGACTTCATTTTGCTACGGGATCTTACAGTAATCTTTTACGTATTTTCTCCTATGGAGTTGGAAGCGAAGAAGGAATCACAATGGAAGCTAGCAGAAATCCTAACAGGAAGTCACATCTCCAAGCTGCTCCAAAAGCTAGAAGGTCATCAATAAGCAACCTAACACGGGGATTTAGCAGACAAGCAAATGAAAATTTGAGCTCAGGTAGTAATGAGCTTTCTTGTAACTTGAGCTCCAAGCTGCTACATCTGGCATGGCATCCAACAACAAAGTTCATTGCTTGTGCTGCAGGGAATAGCTTGTATATGTATTATGCCTAG 1512 39.48 MTLTTDSSSSLQWKFSQAFGERAPGEDVQDIDMISAMEFEKSGDYLAVGDRGGRVVVFERKDEKDWHSRNELEQLDFTTIQHPIFHYKTEFQSHEPEFDYLRSLEIEEKINKVRWCATPNESLFILSTNDKTIKLWKVKDHKPKKVKELNPNPFVHSENVLLAESSFVSGQDKPSVANGYALEWTEKIDNMSPSQDTHAKRANIGETVSARCRKVYAHAHDYNINSISNNSDGETFVSADDLRINLWNLEISDQCFNIIDMKPSNMEDLTEVITAAEFHPIHCNLLAYSSSRGFIRLVDLRQSAICDHNARILQHGESSGLKSFFTEIVSSISDIKFASDGRHLLSRDYMNLKLWDIRMETSPVAIFKIHEHLRPKLCDLYNNDAIFDKFECCLSGYGLHFATGSYSNLLRIFSYGVGSEEGITMEASRNPNRKSHLQAAPKARRSSISNLTRGFSRQANENLSSGSNELSCNLSSKLLHLAWHPTTKFIACAAGNSLYMYYA* 504
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 10037581 10071108 + Vvi17g775 Vvi17g775 779472

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g775 503 PANTHER OS02G0617600 PROTEIN 7 503 - -
Vvi17g775 503 SUPERFAMILY WD40 repeat-like 27 496 IPR036322 GO:0005515
Vvi17g775 503 PIRSF PPA2_B55 1 503 IPR000009 GO:0000159|GO:0019888
Vvi17g775 503 PANTHER PROTEIN PHOSPHATASE PP2A REGULATORY SUBUNIT B 7 503 IPR000009 GO:0000159|GO:0019888
Vvi17g775 503 SMART WD40_4 467 502 IPR001680 GO:0005515
Vvi17g775 503 SMART WD40_4 360 414 IPR001680 GO:0005515
Vvi17g775 503 SMART WD40_4 318 356 IPR001680 GO:0005515
Vvi17g775 503 SMART WD40_4 252 299 IPR001680 GO:0005515
Vvi17g775 503 SMART WD40_4 97 137 IPR001680 GO:0005515
Vvi17g775 503 SMART WD40_4 209 248 IPR001680 GO:0005515
Vvi17g775 503 SMART WD40_4 24 59 IPR001680 GO:0005515
Vvi17g775 503 Gene3D - 4 501 IPR015943 GO:0005515
Vvi17g775 503 MobiDBLite consensus disorder prediction 428 447 - -
Vvi17g775 503 Pfam WD domain, G-beta repeat 212 248 IPR001680 GO:0005515
Vvi17g775 503 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 38 58 IPR000009 GO:0000159|GO:0019888
Vvi17g775 503 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 84 112 IPR000009 GO:0000159|GO:0019888
Vvi17g775 503 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 113 141 IPR000009 GO:0000159|GO:0019888
Vvi17g775 503 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 220 247 IPR000009 GO:0000159|GO:0019888
Vvi17g775 503 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 248 275 IPR000009 GO:0000159|GO:0019888
Vvi17g775 503 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 276 304 IPR000009 GO:0000159|GO:0019888
Vvi17g775 503 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 305 332 IPR000009 GO:0000159|GO:0019888
Vvi17g775 503 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 333 360 IPR000009 GO:0000159|GO:0019888
Vvi17g775 503 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 361 386 IPR000009 GO:0000159|GO:0019888
Vvi17g775 503 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 387 413 IPR000009 GO:0000159|GO:0019888
Vvi17g775 503 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 472 501 IPR000009 GO:0000159|GO:0019888
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g775 K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B - vvi:100243351 993.03
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g775 . . . . . . . Bma12g01043 . . . Cma11g00090 . Car11g00081 Sed08g0112 . Cpe04g01565 Bhi02g00459 Tan09g2259 Cmetu02g0570 . Hepe09g0209 . . Cla06g01669 Cam06g1857 Cec06g1905 Cco06g1911 Clacu06g1813 Cmu06g1754 Cre06g2572 . . . . . . . . . Blo15g00263 . . Bpe07g00846 . . . . . Cmo11g00089 . . . . . . . . . . . . . . . . . . . . . Csa01g00142 Chy02g02586 Cme02g01984
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007287 0 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 6 1 1 36