Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g777 ATGCTTTTCTTTGCAGTACTTAGTGCTGTTCTTGCTGTTACCTTTGGCGATAATTCAACAGATTCCTACTGGCTTCTGAGAATTAAATCAGAGCTAGTTGATCCTGTTGGAGTTCTTGCCAACTGGTCTTCAAGAACTAATATTTGTAGCTGGAATGGATTGGTGTGTTCTGATGATCAACTCCATATTATTGGCCTGAGCCTATCTGGGTCAGGTTTATCAGGTTCTATCTCACCGGAGTTCTCACACCTCACTTCACTGCAAACACTTGATTTATCTTTAAACGCCTTCGCTGGGTCGATTCCTCATGAGCTTGGACTGCTTCAAAATCTAAGGGAACTGCTCCTTTATTCAAATTATCTCTCTGGTAAGATTCCCACAGAGATTTGTCTTTTGAAGAAGTTGCAAGTTCTAAGAATAGGAGATAACATGCTAGCGGGTGAAATTACACCAAGCATTGGTAACTTGAAGGAGTTGAGGGTACTGGGTCTTGCTTATTGCCAATTAAATGGAAGTATTCCAGCTGAAATTGGCAATTTGAAGAATCTGAAATTTCTCGATTTGCAGAAGAACAGCCTCAGCAGTCTTGAAGGAGAAATCCCTGCCTCTATGGGAAATCTTAAATCACTCCAAATTCTGAACCTGGCCAATAACAGCCTTTCTGGATCAATTCCTATTGAGTTGGGTGGTCTCTCCAATTTGAAGTACTTGAATTTGCTTGGAAATAGATTGAGTGGCATGATTCCGTCAGAGCTAAACCAGTTGGATCAACTCCAGAAGCTCGACTTGTCAAGCAATAATCTCTCAGGAACTATAAACTTCCTCAATACCCAATTAAAGAGTCTTGAGGTTCTGGCTTTATCTGATAATCTTTTGACAGATAGCATTCCCGGCAATTTCTGCACCAGCAGTTCAAGTTTGCGGCAAATTTTTCTGGCTCAAAATAAGCTCTCTGGCACTTTCCCCTTGGAGCTGTTGAACTGTTCCTCAATCCAACAATTAGACCTCTCTGATAACAGATTTGAAGGAGTACTGCCGCCTGAGCTGGAAAAATTAGAGAACCTCACAGATCTTCTACTCAACAATAACAGTTTTTCTGGAAAACTGCCTCCTGAAATTGGAAACATGAGTAGCTTGGAAACTCTTTACCTGTTTGACAACATGATCACAGGTAATATCCCGGTGGAACTCGGGAAGTTACAGAAGTTGAGCAGCATCTACCTCTATGACAACCAGCTGTCAGGAAGCATACCAAGAGAGCTAACAAACTGCTCCAGCTTATCAGAGATTGATTTCTTTGGCAACCATTTTATGGGGTCCATTCCTGCAACAATTGGGAAGCTTAGGAATCTTGTTTTCCTGCAACTGAGGCAGAACGACTTGTCGGGTCCGATCCCACCAAGCTTGGGCTATTGCAAAAAGCTTCACACATTGACATTGGCTGATAACAAGCTCTCGGGTTCATTGCCACCAACATTCAGATTCCTCTCCGAGCTTCACCTCTTTTCTCTCTACAACAACTCATTTGAAGGTCCTCTTCCTGAATCACTTTTCCTTTTAAAAAAACTTGGAATTATTAATTTTTCTCATAACAGGTTTAGTGGGAGCATCCTTCCTCTCTTGGGTTCAGACTTTCTAACCCTGTTGGATTTGACAAACAACAGTTTCTCGGGTCCTATTCCCTCTAGACTAGCCATGTCCAAAAATCTAACCCGCCTTCGTCTTGCACACAATCTTCTTACTGGCAACATTTCTTCTGAATTTGGCCAGCTCAAAGAGCTCAAATTTCTTGATCTGTCATTCAACAATTTCACAGGAGAGGTGGCACCTGAACTCTCAAACTGTAAAAAACTTGAACATGTCTTGCTCAACAATAACCAATTCATAGGCATGATTCCTTCATGGCTAGGGGGCTTACAAAAACTAGGAGAGCTAGATCTTTCATTCAACTTCTTCCATGGAACAGTGCCTGCAGCACTTGGGAACTGTTCAATACTACTGAAGCTCTCACTCAATGACAACAGTCTATCCGGGGAGATCCCACCAGAGATGGGAAATCTCACTTCTCTCAATGTCCTTGATCTGCAAAGAAATAACCTTTCTGGGCAGATTCCTTCCACATTTCAGCAGTGCAAGAAGCTCTATGAACTGAGGCTCTCTGAGAACATGTTGACAGGTTCAATACCATCTGAGCTAGGAACCCTTACTGAATTGCAGGTTATCTTAGACCTGAGCAGAAATCTCTTTTCTGGTGAGATTCCATCATCTCTTGGAAATCTTATGAAGTTAGAATCTTTGAACATCTCTTTCAATCAACTCCAAGGAGAAGTTCCTTCTTCACTGGGAAAGCTGACGAGCCTCCACTTGCTAGACCTGTCAAATAATCATCTCCGGGGCCAACTTCCTTCAACTTTTTCAGAATTCCCACTCAGCTCCTTCATGCTTAATGACAAGCTTTGCGGCCCACCATTGGAATCGTGTTCAGAATATGCGGGTCAGGAGAAAAGGAGATTCTCGGATGGTGGAGGAACTGAACATAATATAGAAGAGGAGAAATGGGACTATGGAGATGAAAAGAAAAGGAAAGGTGAGTACTGGAAAGTGAACACCATGGCACTGGTTCCTTCCCAAGAAAAACAAAATCTTTCTTCACCAACATGCATTTTCCAACTCAAAATGGATTCTGAAACCATGGAGACTACCATGGTCTGA 2712 42.26 MLFFAVLSAVLAVTFGDNSTDSYWLLRIKSELVDPVGVLANWSSRTNICSWNGLVCSDDQLHIIGLSLSGSGLSGSISPEFSHLTSLQTLDLSLNAFAGSIPHELGLLQNLRELLLYSNYLSGKIPTEICLLKKLQVLRIGDNMLAGEITPSIGNLKELRVLGLAYCQLNGSIPAEIGNLKNLKFLDLQKNSLSSLEGEIPASMGNLKSLQILNLANNSLSGSIPIELGGLSNLKYLNLLGNRLSGMIPSELNQLDQLQKLDLSSNNLSGTINFLNTQLKSLEVLALSDNLLTDSIPGNFCTSSSSLRQIFLAQNKLSGTFPLELLNCSSIQQLDLSDNRFEGVLPPELEKLENLTDLLLNNNSFSGKLPPEIGNMSSLETLYLFDNMITGNIPVELGKLQKLSSIYLYDNQLSGSIPRELTNCSSLSEIDFFGNHFMGSIPATIGKLRNLVFLQLRQNDLSGPIPPSLGYCKKLHTLTLADNKLSGSLPPTFRFLSELHLFSLYNNSFEGPLPESLFLLKKLGIINFSHNRFSGSILPLLGSDFLTLLDLTNNSFSGPIPSRLAMSKNLTRLRLAHNLLTGNISSEFGQLKELKFLDLSFNNFTGEVAPELSNCKKLEHVLLNNNQFIGMIPSWLGGLQKLGELDLSFNFFHGTVPAALGNCSILLKLSLNDNSLSGEIPPEMGNLTSLNVLDLQRNNLSGQIPSTFQQCKKLYELRLSENMLTGSIPSELGTLTELQVILDLSRNLFSGEIPSSLGNLMKLESLNISFNQLQGEVPSSLGKLTSLHLLDLSNNHLRGQLPSTFSEFPLSSFMLNDKLCGPPLESCSEYAGQEKRRFSDGGGTEHNIEEEKWDYGDEKKRKGEYWKVNTMALVPSQEKQNLSSPTCIFQLKMDSETMETTMV* 904
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 10163868 10167001 - Vvi17g777 Vvi17g777 779474

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g777 903 SMART LRR_sd22_2 255 284 - -
Vvi17g777 903 SMART LRR_sd22_2 132 158 - -
Vvi17g777 903 SMART LRR_sd22_2 180 202 - -
Vvi17g777 903 SMART LRR_sd22_2 328 357 - -
Vvi17g777 903 SMART LRR_sd22_2 400 432 - -
Vvi17g777 903 SMART LRR_sd22_2 591 614 - -
Vvi17g777 903 SMART LRR_sd22_2 376 397 - -
Vvi17g777 903 PANTHER UNNAMED PRODUCT 2 537 - -
Vvi17g777 903 PANTHER UNNAMED PRODUCT 435 820 - -
Vvi17g777 903 PANTHER UNNAMED PRODUCT 361 722 - -
Vvi17g777 903 Gene3D Ribonuclease Inhibitor 472 831 IPR032675 -
Vvi17g777 903 Pfam Leucine rich repeat 209 268 IPR001611 GO:0005515
Vvi17g777 903 SUPERFAMILY L domain-like 544 804 - -
Vvi17g777 903 SUPERFAMILY L domain-like 303 606 - -
Vvi17g777 903 ProSiteProfiles Leucine-rich repeat profile. 182 203 IPR001611 GO:0005515
Vvi17g777 903 Gene3D Ribonuclease Inhibitor 174 275 IPR032675 -
Vvi17g777 903 Gene3D Ribonuclease Inhibitor 276 471 IPR032675 -
Vvi17g777 903 PRINTS Leucine-rich repeat signature 258 271 - -
Vvi17g777 903 PRINTS Leucine-rich repeat signature 784 797 - -
Vvi17g777 903 Gene3D Ribonuclease Inhibitor 18 173 IPR032675 -
Vvi17g777 903 SUPERFAMILY L domain-like 47 365 - -
Vvi17g777 903 Pfam Leucine Rich Repeat 762 784 IPR001611 GO:0005515
Vvi17g777 903 Pfam Leucine rich repeat N-terminal domain 20 57 IPR013210 -
Vvi17g777 903 SMART LRR_typ_2 180 203 IPR003591 -
Vvi17g777 903 SMART LRR_typ_2 784 807 IPR003591 -
Vvi17g777 903 SMART LRR_typ_2 352 376 IPR003591 -
Vvi17g777 903 SMART LRR_typ_2 735 760 IPR003591 -
Vvi17g777 903 SMART LRR_typ_2 132 156 IPR003591 -
Vvi17g777 903 SMART LRR_typ_2 207 230 IPR003591 -
Vvi17g777 903 SMART LRR_typ_2 591 615 IPR003591 -
Vvi17g777 903 SMART LRR_typ_2 231 255 IPR003591 -
Vvi17g777 903 SMART LRR_typ_2 448 472 IPR003591 -
Vvi17g777 903 SMART LRR_typ_2 687 710 IPR003591 -
Vvi17g777 903 SMART LRR_typ_2 279 303 IPR003591 -
Vvi17g777 903 SMART LRR_typ_2 400 424 IPR003591 -
Vvi17g777 903 SMART LRR_typ_2 84 108 IPR003591 -
Vvi17g777 903 SMART LRR_typ_2 639 663 IPR003591 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g777 - - - vvi:100241613 1669.06
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g777 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone2ag0917 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012271 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 0 1 1 1 29