Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g778 ATGAGGGTTGTTTTTCTCTTCTTAATGGCTTCAGGCTTTGTTAGTAATTTAATGGCTGACCCAAGAACAACTGTGGCTGGATTTCAATGCAATTCAACAGAAGCTGTTTCGTCTGTTCTTCTTGCACAAAATTTTGTTCCTGCAATGGCTAATCTGAGCACTCAGGTTAATGAAGATGGGTTTGGAACTTCTATTGTGGGTGAGGCCCCAAATGCTGTTTTTGGACTTGCTCAGTGCTTCAAAGACCTTAGCTCCATTGACTGTCAACTCTGCTTCTCTGAAATTCGGTCTATTCTCCCAAAGTGCTATCCAGATACAGGTGGAAGGATATTCTTTGATGGGTGTTTTGGCCGATATGAGAATTTCTCGTTCTTCGATCAAGGTATGGATTCAGTACAGTTAAAAAACTGTTCTTCTAGCAAGAACAGTTCTCAGCCTGGTATATTTAAAGAAGCTTTAGAAAGGGTCATTGAAAGTGTGAGCTTAAAGGCTCAGAAGAATCAGGGTTTTGCGGTGGCATCCCATTCGGTCTCCAATTTGACATTACATGCTCTTGCACAATGTTGGGAGAGCTTAGATAAGAAGACCTGTAATTCGTGCCTCCAAGCTTCTGCTTCATCAATCATGTCATGTTATCCAGGTGTTGACGGCCGGTCTCTCAATGCAGGCTGTTATATGAGATATTCAAATGAGGTTTTCTGGAATTTGAGCCGGCACACTGGACTTTCTGCAGGGAGAAAGGCCCTCTATATCATATTAGGTTTGGCTGTTGGTGGATTTCTAATCTTAGCTGGAATAGGCTTGTGGAAAAAGGGGCACCTAAGACAGTCATTTGGCAAATCTTTGAAAGATATATATGGATCGGGATTATCTTCTGCTCTTGCTCACTCCCAGCTAAACTTTAGATACCAGGAATTGAGACAAGCAACTAACAATTTTGATTCATCAAACAAGCTTGGACAGGGTAGTTATGGGAGTGTCTACAAGGGAATTCTTTTGGATGGAAGAGAAGTTGCAGTGAAACGGTTGTTTCTGAATACAAGACAGTGGATTGATCAGTTCTTCAATGAGGTGCATCTGATCAACCAGGTACGCCACAAAAATCTGGTGAAGTTGCTAGGTTACAGTGTGGATGGCCAAGAGAGCTTGCTTGTTTACGACTACTACCCCAACAAGAGCTTAGATCATTTTATATTTGATGAAAATCAAGCCCAGATTTTAGACTGGAAAAAGAGGATCGATATCATTCAAGGGGTGGCAGAAGGTCTTTCTTACCTCCATGAGGAGTCTGAAATCCGAATAATCCATAGAGACATAAAAGCAAGTAATATTCTCTTGGATGACAAACTGAAGCCCAAGATAACTGACTTTGGCCTTGCAAGATCTTTCGCAGAGGACCAAACTCATCTTAGCACTGGAATAGCTGGTACCCTAGGTTATATGGCTCCTGAGTATGTTGTCCATGGGCATCTGACAGAGAAAGCTGATGTATACAGCTTTGGAGTACTTCTACTTGAAATTCTGACTGGGCAGAGGTGCAGCAATGGCACTGGAGCAAAACCCGGGCAATTTTTCTTAGCTAAGATATGGAGTCATTACAAGGCTGAAACAGTTGATGAAATAATGGACAGACATTTCTATGACGAAGAAGTGAAAGATGAGATTTTGCATGCCGTTCATGTGGGATTATTGTGCACACAAGCTACACCAAGTTACCGCCCCACAATGGCAAAAGTAGTGGAATTGCTGAGAAGCACCAAGAATCAAGAAAATGTTTTTCCAACAGATCCACCATTTTTAGATGTTTTATCAGTGGAAAACCTGGAAGAAGGTGACGGTATTCATTTGCTATCTGGGGCCTCTGCTCCTGGCTTTTCAGGATCCACGGGAAGTGTACTATATGGAAGATAA 1911 42.02 MRVVFLFLMASGFVSNLMADPRTTVAGFQCNSTEAVSSVLLAQNFVPAMANLSTQVNEDGFGTSIVGEAPNAVFGLAQCFKDLSSIDCQLCFSEIRSILPKCYPDTGGRIFFDGCFGRYENFSFFDQGMDSVQLKNCSSSKNSSQPGIFKEALERVIESVSLKAQKNQGFAVASHSVSNLTLHALAQCWESLDKKTCNSCLQASASSIMSCYPGVDGRSLNAGCYMRYSNEVFWNLSRHTGLSAGRKALYIILGLAVGGFLILAGIGLWKKGHLRQSFGKSLKDIYGSGLSSALAHSQLNFRYQELRQATNNFDSSNKLGQGSYGSVYKGILLDGREVAVKRLFLNTRQWIDQFFNEVHLINQVRHKNLVKLLGYSVDGQESLLVYDYYPNKSLDHFIFDENQAQILDWKKRIDIIQGVAEGLSYLHEESEIRIIHRDIKASNILLDDKLKPKITDFGLARSFAEDQTHLSTGIAGTLGYMAPEYVVHGHLTEKADVYSFGVLLLEILTGQRCSNGTGAKPGQFFLAKIWSHYKAETVDEIMDRHFYDEEVKDEILHAVHVGLLCTQATPSYRPTMAKVVELLRSTKNQENVFPTDPPFLDVLSVENLEEGDGIHLLSGASAPGFSGSTGSVLYGR* 637
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 10170748 10178460 - Vvi17g778 Vvi17g778 779475

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g778 636 ProSitePatterns Protein kinases ATP-binding region signature. 319 341 IPR017441 GO:0005524
Vvi17g778 636 CDD STKc_IRAK 319 583 - -
Vvi17g778 636 SUPERFAMILY Protein kinase-like (PK-like) 299 599 IPR011009 -
Vvi17g778 636 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 6 606 - -
Vvi17g778 636 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 42 6 606 - -
Vvi17g778 636 Gene3D Transferase(Phosphotransferase) domain 1 389 596 - -
Vvi17g778 636 Pfam Salt stress response/antifungal 137 230 IPR002902 -
Vvi17g778 636 Pfam Salt stress response/antifungal 45 121 IPR002902 -
Vvi17g778 636 Pfam Protein kinase domain 315 580 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g778 636 ProSiteProfiles Protein kinase domain profile. 313 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g778 636 SMART serkin_6 313 583 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g778 636 Gene3D Phosphorylase Kinase; domain 1 283 388 - -
Vvi17g778 636 ProSiteProfiles Gnk2-homologous domain profile. 23 124 IPR002902 -
Vvi17g778 636 ProSitePatterns Serine/Threonine protein kinases active-site signature. 434 446 IPR008271 GO:0004672|GO:0006468
Vvi17g778 636 Gene3D - 130 233 IPR038408 -
Vvi17g778 636 Gene3D - 23 124 IPR038408 -
Vvi17g778 636 ProSiteProfiles Gnk2-homologous domain profile. 131 233 IPR002902 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g778 - - - vvi:100246742 1278.46
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g651 Vvi17g778 ECH
Vvi1g650 Vvi17g778 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g778 Blo04g00730 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0150 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005816 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 0 1 5 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76330 PF00069 Pkinase 2.30E-49 CL0016 Vvi PK