Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g78 ATGGATATAATACACAGCTTCCTGAACCTAGTGGCGCCACCCTTTACCTTTGTCGCTCTCTTCCTCTTGTTACCACCATTTCACTTCTTTAAGTTCTTCCTCTCCACCTTCTGGTCTATACTAAGTGAAAACGTCACCGGAAAAAGGTTGTCATCGTCACCGGCGCTTCCTCCGGCATCGGGGAGCATGTGGCCGCGTGCGCTGGGCGCCCCTGATGTCCGTGTGGTTCCTGCCGATGTTTCAAAGCTGGAGGACTGTAAGCGGATTGTTGATGAAGCTGCTAATCACTTTGGGCGAGTGGATCATCTAGTAAATAACGCTGGGATCCAGTCAGCCAGCACGCTTGAAGAAGCCACAGATATCACTAATTTCAGACCAGTTATGGATGTGAACTTCTGGGGTTCAGTTTACACCACCCGTTTTGCAATTCCACACCTCAGAAACAGCCACGGCAAGATCATTGGCATGGCTTCTTCTGCTGCATGGCTGCCCATGCCACGAATGAGCATCTACAATGCCAGCAAAGCAGCATTAATAAGCTTCTACGACACATTGAGGATTGAACTCGGGTCCGACATCGGAGGAATAACAGTTGTGACTCCTGGGTTTATAGAATCTGAAATGACTCAAGGAGAATTCCTAAAGAATGAAGACCAAATAGAAGTGGATCAAGACATGAGAGATGCTCAAGTGAGCATAATCCCAGTTGGCAGGGCAGAAGCATGTGCCAAGGCAATTGTAAAGAGCGCTTGCAGGGGAGAGAAATACCTGACGGAGCCATCGTGGTTCAGGGTCACCTACTTGTGGAAGGTGTTGTGCCCTGAGGTGATCGAGTGGTGTTTCCGGTTGTTCTATCTTGCTAGGCCAGGGGAATCGGAAACACTCAGCAAGAAGATCCTGGACATCTCTGGGGCTCGTGGGTTTCTGTATCCAACCACAATCCAAACAACTGATGTCAAAGCAGATTAA 969 48.92 MDIIHSFLNLVAPPFTFVALFLLLPPFHFFKFFLSTFWSILSENVTGKRLSSSPALPPASGSMWPRALGAPDVRVVPADVSKLEDCKRIVDEAANHFGRVDHLVNNAGIQSASTLEEATDITNFRPVMDVNFWGSVYTTRFAIPHLRNSHGKIIGMASSAAWLPMPRMSIYNASKAALISFYDTLRIELGSDIGGITVVTPGFIESEMTQGEFLKNEDQIEVDQDMRDAQVSIIPVGRAEACAKAIVKSACRGEKYLTEPSWFRVTYLWKVLCPEVIEWCFRLFYLARPGESETLSKKILDISGARGFLYPTTIQTTDVKAD* 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 746759 748821 - Vvi17g78 Vvi17g78 778775

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g78 322 Gene3D - 62 287 - -
Vvi17g78 322 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 98 109 IPR002347 -
Vvi17g78 322 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 151 159 IPR002347 -
Vvi17g78 322 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 171 190 IPR002347 -
Vvi17g78 322 PANTHER RETINOL DEHYDROGENASE-RELATED 66 312 - -
Vvi17g78 322 PANTHER RETINOL DEHYDROGENASE-RELATED 1 48 - -
Vvi17g78 322 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 158 186 IPR020904 GO:0016491
Vvi17g78 322 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 67 285 IPR036291 -
Vvi17g78 322 PRINTS Glucose/ribitol dehydrogenase family signature 98 109 IPR002347 -
Vvi17g78 322 PRINTS Glucose/ribitol dehydrogenase family signature 145 161 IPR002347 -
Vvi17g78 322 PRINTS Glucose/ribitol dehydrogenase family signature 171 190 IPR002347 -
Vvi17g78 322 PRINTS Glucose/ribitol dehydrogenase family signature 192 209 IPR002347 -
Vvi17g78 322 Pfam short chain dehydrogenase 71 212 IPR002347 -
Vvi17g78 322 PANTHER 11-BETA-HYDROXYSTEROID DEHYDROGENASE 1B-LIKE ISOFORM X1 1 48 - -
Vvi17g78 322 PANTHER 11-BETA-HYDROXYSTEROID DEHYDROGENASE 1B-LIKE ISOFORM X1 66 312 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g78 K22418 HSD1; 11beta/17beta-hydroxysteroid dehydrogenase [EC:1.1.1.146 1.1.1.-] - vvi:100260981 560.451
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g1299 Vvi17g78 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g78 . . . . . . . . Cmo13g00851 Cmo18g00230 . . . . . Cpe20g00296 . . . . . . . . . . . . . . . . . . . Lsi02g00518 Csa01g00980 Chy12g01152 Cme12g01573 . . . . . . Bma03g01242 . Sed08g2421 . . Cma13g00820 Cma18g00306 Car13g00664 Car18g00241 . . Bhi08g01520 Tan05g2993 Cmetu12g1667 Lac10g0600 . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000732 2 6 3 2 1 3 2 3 3 3 1 3 4 4 4 4 3 1 2 3 3 5 4 4 3 3 4 2 4 4 93