Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g781 ATGACTGTTTTGGGGAAAGTCGCCGTTCCTAAACCTATAAACTTACCCAGTCAAAGGTTAGAAAATCATGGTCTGGACCCGACCGTGGAAATTGTTCCTAAGGGTACCCTTAGCTGGGGCAACCGATCTTCTGCATCAAATGCTTGGGGTTCCTCCACAATCTCTCCATCTACTGATGGTGGCAGTGGTTCACCAAGTCACCTCAGTGGTCGCCCTTCATCTGGTGGAAGTGGCACTCGACCATCAACTGCCGGTAGCGATAGAGCCTCTGAATCTACTGCCAGTGCATGGGGTCCTAGCTCTAGACCATCATCAGCTTCTGGGCCATTGACATCAAATCAATCATCACTAGCATCATTACGTCCTCGCAGTGCAGAAACAAGACCTGGTAGCTCACAGCTATCTCGGTTTGCTGAACCCTTGTCTGAAAATCCAGTGGCGTGGGGTGCAGCTGGTACTGCTGAAAAATTGGGGGTGGCATCCTCCAAGAGTGATGGGTTTTCTCTGACTTCAGGAGATTTTCCAACACTTGGTTCAGAAAAAGACAATTTTGGAAAGAACACCGAGTTACAAGAGCACGGTTCACATGCTCGCCCTGGTTCATCTTCTGGCAAAGTAGCACCAGTAAAAGAGAGGACTGGGACCTCCCCAGTTGGTGATGTTTCCGTCAATGATGTCAAAAGTGGAGCTGTAAATACTTGGAAAAGGGATAATTCCACATATGTGGAAGATGGGCCCCGACCCAGTGTGGAGAAATGGCGGGGGGAATCCCAACCATACCTAAATGCTAGCATTCCCCCTCAGCATTTTGAACCTTGGCATGGAACACCTTCTCCAGGTGGCGTTTGGTTTAGAGGACCTCCAGGTCCTCCATATGGCGCACCGGTTACTCCTGGTGGCTTTCCCATGGAACCATTTCCTTATTATCGTCCCCAGATTCCAGCTACTGCCCTTGCCAACTCACAGCCAGTTCCCCCACCAGGAGCTGGACCAAGAGGACACCACCCGAAGAATGGAGATATGTACAGACCTCATATGCCTGATGCTTATATCCGCCCAGGTATGCCAATCAGGCCTGGTTTTTACCCTGGTCCAGTGCCTTATGAGGGCTATTATCCTCCTCCAATGGGTTATTGTAATTCCAATGAACGAGATCTTCCATTTATGGGAATGGCAGCCGGTCCTCCTGTTTATGAAAGGTACTCAAATCAAAATGCTCAGCAAGCTGAATCTGGTTATCATCATGATAATAGAGGACCGTACAAGGTTCTTCTGAAGCAACACAATGATTGGGATGGGAAAGATGAACAGAAGTGGGATCACACTGGGACAACCAATGCATCAGATCTAGCAAAGGGAGACCAACGAAAAACTTTGCCATGGGATGATGATTGGGAAGGAGATCCAAAAAAGAAATTTGAAACTGCAGCCTCTACTTTTCCAGAAGCTCCAAAACCATCCCCTCCTGCTCCAAAGGATTCCACTCTGATTCAGAAAATAGAGGGTTTAAATGCAAAAGCCCGGGCTTCTGATGGACGGCATGATGCTCCATTTGTTTCTAGCAGGGAGAAGCAAAAGAATGGTTTACAAGTTGATAATACTAAGACCAATCAATCCACAAAGGAGGCTGATTCTGGTGCTACATATTCTGAAAGGATTCACACCAATGCAATCCCTGCCTCCCATGAAGTAGGCGTTTCTACTGGACTTGGAAGCAAAGATAGAAGCCTTGAACAGGTAGCTGCTAGTGGAACAGTGATCTCCAGGAGAGCAACTCATGGTGGGCAAGGAAGAGTTGACCATCGTGGTAAAGGAAGGGTCAATGCTCAAGATGTTGATGGATGGCGGAAGAAATCTCTTGTTGCAGATTCTTCAAGTGTAACAGGGTCTGGCAATGTTGAACTGTCCTCTAATGTAGATGTGCAAGACTGCCATTCCTCCATGCAGGTTCCTCAGAAGTCTGGGTTACACCTTCAAGGAACAGAGGATGGAGAATCTGGGTCCATGTCTGATCCAAGTGATAGCCAGGCACAGCGAGCTAAGATGAAAGAGATAGCCAAGCAACGGGGGAGACAACTACAGAAGGAGGAGGAAGAGCGACTAAGAGAGCAGAAAGCCAAGGCTCATGCTAAATTGGAAGAGTTGAATAGGCGTACACGGACAGTGGATGGTTCGACTCAGAAGTTGGAAAATGTTCAATCAAGTGGTGCTTTCCAGCACAAGCAAGAAGAATTGCAAATTGTTGCTGAATCCAATATGGATGCTAGCAAAATTGGAGCATCATCCTCGGCCTTGATTTCTGGCCCCAGTGTAACTACTCAGATTCATGAAAGCAATGCCAGTAGAGTTGGAGGCTCCACTGATTTAAATTCTCCCCAAATAAATGATGCTAGTATCTCGAAGCAGAAGCGAGTGGGTTATAAACAAAGGCAGAATATTCCAAAGCATAACATCCCTGTGGAAAAGAATTTAACTGAAAAGTTAGTTTCTACTGTGACAATTGAGGTGCCAAAGAGTCTTACTGATGTAGTGGTCAGTACTGCTGCTTCAGTTGAGCATGTTGCAACTGAAATTGTAACGAGCAGTGAATCAAACTTGCCTGTTAATGCAAATGTTACCACGGAGTCGGGACATCAGAGAAGGAAAAATAACAGGATTGGCAGGAACAAGCTGAAGCTGGAGGAGGCATCATTGCCAAGAGAGACAAATCCTGGTAAGGCTTCTGTTGAAAATGCTGAGCCAAAGGCTTCTGTACTTGAGTTGGATCCTAGTTCAATTGAGTCAATCTCCAATTCTAAGGATGCAATTCAGTCTTTTGAGAACCGTGGATCTTTACCAAACGAAGAAGCCCATGGTAGACCAACGAACCAGTGGAAACCCCAACATCCTCGTAGGATGCCAAGAAACCCCCAAGTTAATAGGTCTGTGGAAAAATTCCACAACAGTGATTCTGTTGTTTGGGCACCTGTGCAGTCACAGAACAAAAGTGAGGTTGCTGATGAGGTCAGCCAAAAAACTGTAGTTGAAAATACATCGTCAAGGGGGGATCATCAAGTGCAGAATAATCTTAAAAACAAGAGGGCAGAAATACAGAGATATGTTCCAAAGCCCGTTGCCAAAGAACTGGCTCAACAAGGAAGCATTCAAAGACCAACTTCTCCTTCAATCAATCAGACAACATCAGATGAGACTATTGGGAGGGGGGAATCTGGTTCTCAAAGCACTGACAGTGCTCAACTTGCTGGTACAGCTATTGAGAAATCAGGGTTTGCTGTGGAGTCCAGGAATGGTGACACTAAGCCAAATAGGCAGGCAAAATCTGGTTCATGGCGCCAAAGGGTTCCAATAGAATCAACCCATGTACAAGGCTTGCAAGAGGAATCCTCTTACAATTCAAGCGTGGAGAAGAATGTTCAGAAATTCATTGAGCATAGTGAAACCCTAAAGCCTGATGGGCAATCAGCTAAGGGCCAATCAAAATATTCTGATGATTGGAATACTCCTGACGGTTGGAACACACTTGAAAGTTCTGATTCAGCTGCTCCAGCCCCATCTGCTGTTGTGAAAGATCAAGGAGTAACAGGCAGAGGAAAGCGACATCCATTTAAAGGGCAAAAGGGTACGGGGAATACTCATGGTCTTGATCACAAAAATGTTAGTAGTGGGAACACAGATAAAATGTGCTTTCAATCCTCGCCTCTTGAGATGGGTCAAACAGACACAACTGTTGCTTTGAAAGAAAATCGTGGTGCTGGGGAGCGGTCATCATCTCATTGGCAACCCAAATCCCAGGCATATCCGGTGCATAATCAGCGGGGTGGCAGGCACAACAGCAGTCAAAATGAAAAAAATATAGCTTCACTTAAAGGACGCCCTCACTCCCCAATCCAAGGTCCTGTTAACTCTGTTGAACCACTTCCTGCAGGTACTGATATTCGAAATGAGCAGCGGTTGTCCACAGGTTTCCGTAAGAATGGAAACCACAGTAACCGTTTTAGCAGAGGGGGGCATGAATCTCATGGAGATTGGAGCTCAGGTGGGCAAGATAACAAGCAACACAATCAACCTCCAAACCGGGAAAGGCAGAGGCATAATTCACATAACGAATACCAGCCTGTTAGGCCATTCAGCAACAACAGATCAAACTTTGAAGGAGCATCAGATGGTTCACATAATACAAGTTTGCGGTTCAGGGAGAGGGGTCACGGGCACTCAAGGCGTGGTGGGGGAAACTTTTATAGTCGGCAAAGTGGGAATGTTCAAGTACTATTATGTAGGTTTGAGAAACGGGAGATGTGTGATATGCAAGAATAG 4314 46.18 MTVLGKVAVPKPINLPSQRLENHGLDPTVEIVPKGTLSWGNRSSASNAWGSSTISPSTDGGSGSPSHLSGRPSSGGSGTRPSTAGSDRASESTASAWGPSSRPSSASGPLTSNQSSLASLRPRSAETRPGSSQLSRFAEPLSENPVAWGAAGTAEKLGVASSKSDGFSLTSGDFPTLGSEKDNFGKNTELQEHGSHARPGSSSGKVAPVKERTGTSPVGDVSVNDVKSGAVNTWKRDNSTYVEDGPRPSVEKWRGESQPYLNASIPPQHFEPWHGTPSPGGVWFRGPPGPPYGAPVTPGGFPMEPFPYYRPQIPATALANSQPVPPPGAGPRGHHPKNGDMYRPHMPDAYIRPGMPIRPGFYPGPVPYEGYYPPPMGYCNSNERDLPFMGMAAGPPVYERYSNQNAQQAESGYHHDNRGPYKVLLKQHNDWDGKDEQKWDHTGTTNASDLAKGDQRKTLPWDDDWEGDPKKKFETAASTFPEAPKPSPPAPKDSTLIQKIEGLNAKARASDGRHDAPFVSSREKQKNGLQVDNTKTNQSTKEADSGATYSERIHTNAIPASHEVGVSTGLGSKDRSLEQVAASGTVISRRATHGGQGRVDHRGKGRVNAQDVDGWRKKSLVADSSSVTGSGNVELSSNVDVQDCHSSMQVPQKSGLHLQGTEDGESGSMSDPSDSQAQRAKMKEIAKQRGRQLQKEEEERLREQKAKAHAKLEELNRRTRTVDGSTQKLENVQSSGAFQHKQEELQIVAESNMDASKIGASSSALISGPSVTTQIHESNASRVGGSTDLNSPQINDASISKQKRVGYKQRQNIPKHNIPVEKNLTEKLVSTVTIEVPKSLTDVVVSTAASVEHVATEIVTSSESNLPVNANVTTESGHQRRKNNRIGRNKLKLEEASLPRETNPGKASVENAEPKASVLELDPSSIESISNSKDAIQSFENRGSLPNEEAHGRPTNQWKPQHPRRMPRNPQVNRSVEKFHNSDSVVWAPVQSQNKSEVADEVSQKTVVENTSSRGDHQVQNNLKNKRAEIQRYVPKPVAKELAQQGSIQRPTSPSINQTTSDETIGRGESGSQSTDSAQLAGTAIEKSGFAVESRNGDTKPNRQAKSGSWRQRVPIESTHVQGLQEESSYNSSVEKNVQKFIEHSETLKPDGQSAKGQSKYSDDWNTPDGWNTLESSDSAAPAPSAVVKDQGVTGRGKRHPFKGQKGTGNTHGLDHKNVSSGNTDKMCFQSSPLEMGQTDTTVALKENRGAGERSSSHWQPKSQAYPVHNQRGGRHNSSQNEKNIASLKGRPHSPIQGPVNSVEPLPAGTDIRNEQRLSTGFRKNGNHSNRFSRGGHESHGDWSSGGQDNKQHNQPPNRERQRHNSHNEYQPVRPFSNNRSNFEGASDGSHNTSLRFRERGHGHSRRGGGNFYSRQSGNVQVLLCRFEKREMCDMQE* 1438
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 10201723 10209064 - Vvi17g781 Vvi17g781 779478

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g781 1437 MobiDBLite consensus disorder prediction 1254 1287 - -
Vvi17g781 1437 PANTHER PROTEIN MODIFIER OF SNC1 1 1 1282 - -
Vvi17g781 1437 PANTHER PROTEIN MODIFIER OF SNC1 1 1276 1416 - -
Vvi17g781 1437 MobiDBLite consensus disorder prediction 646 676 - -
Vvi17g781 1437 MobiDBLite consensus disorder prediction 991 1028 - -
Vvi17g781 1437 MobiDBLite consensus disorder prediction 1144 1415 - -
Vvi17g781 1437 MobiDBLite consensus disorder prediction 594 612 - -
Vvi17g781 1437 MobiDBLite consensus disorder prediction 1095 1132 - -
Vvi17g781 1437 MobiDBLite consensus disorder prediction 1211 1245 - -
Vvi17g781 1437 MobiDBLite consensus disorder prediction 646 700 - -
Vvi17g781 1437 Coils Coil 691 718 - -
Vvi17g781 1437 MobiDBLite consensus disorder prediction 991 1027 - -
Vvi17g781 1437 MobiDBLite consensus disorder prediction 1313 1329 - -
Vvi17g781 1437 MobiDBLite consensus disorder prediction 455 475 - -
Vvi17g781 1437 MobiDBLite consensus disorder prediction 506 521 - -
Vvi17g781 1437 MobiDBLite consensus disorder prediction 1354 1368 - -
Vvi17g781 1437 MobiDBLite consensus disorder prediction 1045 1082 - -
Vvi17g781 1437 MobiDBLite consensus disorder prediction 318 340 - -
Vvi17g781 1437 MobiDBLite consensus disorder prediction 781 807 - -
Vvi17g781 1437 MobiDBLite consensus disorder prediction 1151 1180 - -
Vvi17g781 1437 MobiDBLite consensus disorder prediction 433 549 - -
Vvi17g781 1437 MobiDBLite consensus disorder prediction 585 612 - -
Vvi17g781 1437 MobiDBLite consensus disorder prediction 1 138 - -
Vvi17g781 1437 MobiDBLite consensus disorder prediction 156 224 - -
Vvi17g781 1437 MobiDBLite consensus disorder prediction 37 138 - -
Vvi17g781 1437 MobiDBLite consensus disorder prediction 163 184 - -
Vvi17g781 1437 MobiDBLite consensus disorder prediction 943 969 - -
Vvi17g781 1437 MobiDBLite consensus disorder prediction 878 899 - -
Vvi17g781 1437 MobiDBLite consensus disorder prediction 1040 1132 - -
Vvi17g781 1437 PANTHER PROTEIN MODIFIER OF SNC1 1 1276 1416 IPR038808 -
Vvi17g781 1437 PANTHER PROTEIN MODIFIER OF SNC1 1 1 1282 IPR038808 -
Vvi17g781 1437 MobiDBLite consensus disorder prediction 1369 1392 - -
Vvi17g781 1437 MobiDBLite consensus disorder prediction 869 917 - -
Vvi17g781 1437 MobiDBLite consensus disorder prediction 677 700 - -
Vvi17g781 1437 MobiDBLite consensus disorder prediction 523 549 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g781 - - - vvi:104882280 2564.26
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g781 . . . . . . . . . . Cma10g00119 Cma11g00088 Car10g00106 Car11g00079 Sed08g0103 . Cpe04g01566 Bhi02g00478 Tan09g2266 Cmetu02g1512 . Hepe09g0213 . . Cla06g01673 Cam06g1861 Cec06g1911 Cco06g1916 Clacu06g1817 Cmu06g1758 Cre06g2575 . . . . . . . . . Blo15g00262 . . Bpe07g00848 . . . . Cmo10g00123 Cmo11g00088 . . . . . Cpe18g00849 . . . . . . . . . . . . . . Lsi06g01564 Csa01g00136 Chy02g02591 Cme02g01988
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006102 0 1 1 0 2 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 1 1 39