Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g791 ATGGCGGATCCAAGCTCCTCAGGCCCTTCCTCTTCTCCGGAAGTGAAAAGTGTTAAGAAGGATTTTTCTACTGCAATTTTGGAACGTAAGAAGTCACCCAATCGTCTCGTTGTCGATGAAGCGGTGAATGATGACAATTCTGTGGTTTCCATGAACCCTGCAACAATGGAAAAGCTTCAGTTCTTTCGAGGAGACACTGTTCTAATCAAGGGAAAGAAACGAAAAGACACAGTGTGCATTGTTCTTGTTGATGAACAATGCGAAGAACCAAAGATCAGAATGAACAAAGTTGTACGAGCCAATCTTAGGGTACGCCTTGGAGATGTTGTTTCTGTCCATCAGTGTCCTGATGTGAAGTACGGAAAGCGAGTTCACATCCTCCCAATTGATGATACAATTGAGGGTGTGACTGGCAACCTGTTTGATGCATATTTAAAACCATATTTCTTGGAATCCTATCGGCCTGTTAGGAAGGGTGACCTTTTCCTGGTCAGAGGAGGGATGCGAAGTGTTGAATTCAAAGTAATTGAAACAGATCCTGGTGAATATTGTGTTGTTGCACCAGATACTGAGATCTTCTGTGAGGGAGAACCCATCAAACGTGAAGATGAGGAGAGATTGAATGAAGTTGGCTATGATGATGTTGGTGGTGTAAGGAAGCAGATGGCCCAGATCCGTGAGCTGGTAGAACTTCCCCTTAGGCACCCACAGCTTTTCAAATCTATTGGGGTGAAGCCACCAAAAGGCATTTTGCTCTATGGGCCACCTGGGTCTGGAAAAACCCTAATTGCAAGAGCTGTAGCTAATGAGACTGGTGCATTTTTCTTCCTGATAAATGGACCTGAAATAATGTCAAAGTTGGCTGGTGAAAGTGAAAGTAACTTGAGGAAGGCATTTGAGGAAGCAGAAAAGAATGCCCCATCCATCATTTTCATTGATGAGCTAGATTCTATTGCTCCAAAGAGGGAAAAGACACATGGTGAAGTGGAGAGGCGTATTGTATCCCAGCTGTTGACTCTAATGGATGGCCTTAAGACCAGGGCTCACGTGATTGTCATTGGTGCTACCAACAGGCCAAATAGCATTGACCCTGCATTAAGGAGATTTGGGAGATTTGATAGAGAGATTGACATTGGTGTACCAGATGAGGTTGGCAGGCTGGAAGTCCTTCGAATCCACACAAAGAATATGAAACTTTCTGATGATGTTGATCTTGAAAGAGTTGCAAAAGATACACATGGTTATGTTGGTGCAGATCTTGCTGCTCTTTGCACAGAAGCTGCTCTTCAGTGTATCAGGGAGAAAATGGATGTGATTGACTTGGAGGATGAGACAATTGATGCTGAGGTGTTGAATTCCATGGCTGTGACTAATGAACACTTCCAAACTGCACTGGGGTCTTCCAATCCATCGGCCTTGCGTGAAACAGTTGTGGAGGTTCCAAATGTGTCATGGGAGGACATTGGTGGGTTGGACAATGTTAAAAGAGAGCTTCAGGAGACTGTCCAATATCCAGTGGAGCATCCTGAGAAGTTCGAGAAATTTGGCATGTCACCTTCTAAAGGTGTGCTCTTCTATGGACCTCCTGGCTGTGGTAAAACCCTACTTGCGAAGGCAATTGCAAATGAATGCCAGGCCAACTTCATAAGTGTTAAAGGACCTGAGTTGCTGACCATGTGGTTTGGAGAAAGTGAGGCAAATGTGCGGGAGATATTTGACAAGGCACGGCAGTCAGCACCGTGTGTACTCTTCTTTGATGAACTTGATTCAATTGCAACTCAGCGTGGCAGTTCTGTAGGGGATGCTGGTGGTGCTGCTGACAGAGTCTTGAATCAACTTCTGACAGAAATGGATGGAATGACTGCAAAGAAGACTGTTTTCATCATAGGAGCAACAAACAGGCCTGACATTATTGACCCAGCATTGCTCAGGCCTGGACGTTTGGACCAGTTGATTTACATTCCACTACCAGATGAGGCTTCCCGTCTGCAAATATTCAAAGCATGCTTAAGGAAGTCACCAGTCTCTAGGGATGTTGACCTAGTAGCTCTTGCACGGTATACTCATGGTTTTAGTGGTGCAGATATCACTGAAATTTGTCAACGGTCCTGCAAATATGCCATTAGAGAAAATATTGAGAAGGATATTGAGAGGGAGAGAAAGAAGACAGAGAACCCTGAGGCGATGGAAGAAGATGATGTTGATGATGTCCCTGAGATTAAAGCAGCACACTTTGAGGAGTCTATGAAATTTGCACGCCGAAGTGTCAGTGATGCAGATATCAGGAAGTACCAGCTCTTTGCTCAGACTCTACAGCAATCACGGGGATTTGGATCTGAGTTTCGGTTTCCAGATCAGCCCAACAATGCCACAGCAGCATCAACAGCTGCAGACCCATTCTCCTCAGCAGCTGCTGCTGGAGATGATGATGACCTGTACAGCTGA 2445 45.03 MADPSSSGPSSSPEVKSVKKDFSTAILERKKSPNRLVVDEAVNDDNSVVSMNPATMEKLQFFRGDTVLIKGKKRKDTVCIVLVDEQCEEPKIRMNKVVRANLRVRLGDVVSVHQCPDVKYGKRVHILPIDDTIEGVTGNLFDAYLKPYFLESYRPVRKGDLFLVRGGMRSVEFKVIETDPGEYCVVAPDTEIFCEGEPIKREDEERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKTRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERVAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEVLNSMAVTNEHFQTALGSSNPSALRETVVEVPNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMTAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQIFKACLRKSPVSRDVDLVALARYTHGFSGADITEICQRSCKYAIRENIEKDIERERKKTENPEAMEEDDVDDVPEIKAAHFEESMKFARRSVSDADIRKYQLFAQTLQQSRGFGSEFRFPDQPNNATAASTAADPFSSAAAAGDDDDLYS* 815
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 10362992 10368275 + Vvi17g791 Vvi17g791 779488

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g791 814 SMART CDC48_N_2 35 118 IPR003338 -
Vvi17g791 814 SMART AAA_5 246 382 IPR003593 -
Vvi17g791 814 SMART AAA_5 519 658 IPR003593 -
Vvi17g791 814 CDD AAA 489 656 - -
Vvi17g791 814 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 209 471 IPR027417 -
Vvi17g791 814 SUPERFAMILY Cdc48 domain 2-like 117 209 IPR029067 -
Vvi17g791 814 Gene3D - 13 117 - -
Vvi17g791 814 Pfam Cell division protein 48 (CDC48), domain 2 137 200 IPR004201 -
Vvi17g791 814 ProSitePatterns AAA-protein family signature. 626 644 IPR003960 GO:0005524|GO:0016887
Vvi17g791 814 SMART CDC48_2_2 135 201 IPR004201 -
Vvi17g791 814 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 481 769 IPR027417 -
Vvi17g791 814 TIGRFAM CDC48: AAA family ATPase, CDC48 subfamily 36 772 IPR005938 GO:0016787
Vvi17g791 814 MobiDBLite consensus disorder prediction 778 814 - -
Vvi17g791 814 SUPERFAMILY ADC-like 31 115 IPR009010 -
Vvi17g791 814 Gene3D - 381 472 - -
Vvi17g791 814 PANTHER CELL DIVISION CYCLE PROTEIN 48 HOMOLOG 13 786 - -
Vvi17g791 814 Pfam ATPase family associated with various cellular activities (AAA) 523 656 IPR003959 GO:0005524|GO:0016887
Vvi17g791 814 Pfam ATPase family associated with various cellular activities (AAA) 250 379 IPR003959 GO:0005524|GO:0016887
Vvi17g791 814 ProSitePatterns AAA-protein family signature. 350 368 IPR003960 GO:0005524|GO:0016887
Vvi17g791 814 Gene3D - 118 214 - -
Vvi17g791 814 MobiDBLite consensus disorder prediction 778 798 - -
Vvi17g791 814 CDD AAA 216 379 - -
Vvi17g791 814 Pfam AAA+ lid domain 678 719 IPR041569 -
Vvi17g791 814 Pfam AAA+ lid domain 402 444 IPR041569 -
Vvi17g791 814 Gene3D - 660 768 - -
Vvi17g791 814 Gene3D - 473 656 IPR027417 -
Vvi17g791 814 PANTHER AAA-FAMILY ATPASE 13 786 - -
Vvi17g791 814 Pfam Cell division protein 48 (CDC48), N-terminal domain 35 116 IPR003338 -
Vvi17g791 814 Gene3D - 215 379 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g791 K13525 VCP, CDC48; transitional endoplasmic reticulum ATPase - vvi:100258668 1548.1
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g791 . . . . . . . . . . . Cma11g00084 . Car11g00077 . . Cpe04g01568 Bhi02g00487 . . . . . . Cla06g01678 Cam06g1866 . Cco06g1920 Clacu06g1821 Cmu06g1763 Cre06g2580 . . Cone13ag0155 . . . . . . . . . . . . . . . Cmo11g00085 . . . . . . . . . . . . . . . . . . . . Lsi06g01567 Csa01g00131 Chy02g02596 Cme02g01992
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000638 2 4 4 4 4 3 5 3 3 3 3 2 5 3 3 5 3 3 5 3 3 3 3 3 3 3 3 3 2 3 99