Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g792 ATGGCTTCCGCCATCAACCAACAAGGCCAAGCTCTACTTTGGTGGAAGGGGAGCTTGAAGGAAGCGCCAGAGGCCTTAAGCAACTGGGACCAGAGCAATGAGACTCCATGTGGGTGGTTTGGGATCTCTTGCAACTCAGACAATCTAGTGGTGGAACTCAATTTGAGGTATGTCGATTTGTTTGGGCCGCTTCCCTCTAATTTCAGTTCATTGACGTCCTTGAACAAGCTAGTCTTAACTGGAACCAACCTCACTGGTTCCATCCCAAAAGAGATCGGTGTTCTTCAAGATTTGAATTATCTAGACTTGAGCGACAATGCCTTAACTGGTGAAATCCCAAGTGAGGTTTGCAGCTTGCTCAAGCTCGAACAGCTCTACCTCAATTCAAACTGGCTTGAGGGATCTATCCCAGTCCAACTCGGGAACCTCACTAGCTTGACATGGCTAATTCTATACGACAACCAACTGAGCGGCCCAATCCCCCCTGAGCTGGGTGACTGCACCGAGCTGCAAAACATCTACCTATACGAGAACGCGCTCACTGGATCCATCCCAGCCCGCCTAGGAAGCCTCCGGAACCTCCAGAACCTATTGCTATGGCAAAACAACCTGGTGGGCACCATTCCACCGGAGTTGGGAAACTGCAAGCAATTAGTAGTGATTGATATATCCATGAATTCCATATCCGGTAGAGTGCCTCAGACGTTTGGGAATCTGAGCTTTTTGCAGGAACTTCAACTGAGCGTGAACCAAATCTCAGGTCAGATTCCAGCGCAAATTGGGAACTGTCTCGGCCTCACCCATATCGAGCTCGACAACAACAAGATCACTGGTACAATACCTTCCTCTATCGGTGGCCTACTCAAGAAGCTTAACAAGCTATTGCTTTTATCCAACAATCTGGCCGGTGAGATACCTCCGGAGATTGGTGAGTGTTCGTCGTTGATACGGCTCCGAGCGAGCGATAACAAGCTGGCTGGATCGATCCCGCCACAGATTGGGAATTTAAAGAATTTGAATTTCTTGGATCTGGCATTGAATCGCCTCACTGGTGTCATACCGCAGGAGATCTCTGGTTGCCAGAATCTGACGTTCCTGGACTTGCATTCCAACTCGATTGCCGGAAACCTACCGGAGAATTTGAACCAACTGGTTTCCCTCCAGTTCATCGCTTTGAATCTGAGCTGGAACAAACTTTCCGGCAAAATTCCGTCGGACGTCCTCGCCGGCAACCCCGCCCTCTGCCTCTCCGGCGACCAGTGCGCCGCCGACAAACGCGGTGGCGCTGCCCGCCACGCCGCGGCGGCCAGGGTGGCCATGGTGGTGCTACTATGCGCCGCCTGCGCGCTGCTCCTCGCGGCGCTCTACATCATTCTCGGGAACAAGATGAATCCACGTGGCCCCGGAGGGCCCCACCAGTGCGATGGCGACAGCGATGTGGAGATGGCCCCCCCATGGGAGTTGACCCTGTACCAAAAACTGGACCTCTCTATCGCTGACGTGGTACGCTGCCTGACAGTTGCCAACGTCGTCGGCCGTGGCCGCTCCGGCACGAAACTCCTCTTCTACGATTACTTACCAAGTGGTACATTAGGCACATTACTCCATGAATGCAACTCAGCCATAGTTGAGTGGGAGAGTCGGTTCAATATAGCCTTGGGCGTGGCGGAGGGCTTAGCCTATCTGCACCATGATTGTGTGCCACCCATCATCCACCGAGACGTCAAGGCTCACAACATTTTGTTAGGGGACCGATACGAGGCCTGCTTGGCGGACTTTGGGCTAGCCAGGTTGGTGGAGGACGACGATGGCAATGGGTCCTTCTCCGCCAACCCTCAATTCGCCGGATCCTACGGCTACATTGCACCCGAGTACGCTTGCATGTTGAAGATAACCGAAAAGAGCGATGTGTACAGCTTCGGGGTGGTTTTGCTGGAAATCATAACCGGGAAGAAGCCGGTGGACCCTTCATTCCCTGATGGGCAACATGTAATTCAGTGGGTCCGAGAGCAGCTAAAGAGCAAGAGGGACCCGGTTCAGATACTGGACCCGAAGCTCCAGGGCCACCCAGATACACAAATACAAGAAATGCTCCAAGCACTGGGGATATCCCTCTTATGCACAAGCAACCGTGCGGAAGATCGTCCTACAATGAAAGATGTTGCGGTTTTGTTAAGGGAAATACGCCACGAGCCCAGCACAGGAACTGAGCCTCACAAGCCTAATAGCAATGGATCCAAAAAGCCTGAAGCTCCTGCCTACTCCTCCCAACTCTTGCTCCTCCAAGGCTCTTCCCAGTACTCACTGGCATATTCATCTTCCTCAGCTGGTTATAATGTCAATAATGATGCTAGTGTGTGA 2361 52.48 MASAINQQGQALLWWKGSLKEAPEALSNWDQSNETPCGWFGISCNSDNLVVELNLRYVDLFGPLPSNFSSLTSLNKLVLTGTNLTGSIPKEIGVLQDLNYLDLSDNALTGEIPSEVCSLLKLEQLYLNSNWLEGSIPVQLGNLTSLTWLILYDNQLSGPIPPELGDCTELQNIYLYENALTGSIPARLGSLRNLQNLLLWQNNLVGTIPPELGNCKQLVVIDISMNSISGRVPQTFGNLSFLQELQLSVNQISGQIPAQIGNCLGLTHIELDNNKITGTIPSSIGGLLKKLNKLLLLSNNLAGEIPPEIGECSSLIRLRASDNKLAGSIPPQIGNLKNLNFLDLALNRLTGVIPQEISGCQNLTFLDLHSNSIAGNLPENLNQLVSLQFIALNLSWNKLSGKIPSDVLAGNPALCLSGDQCAADKRGGAARHAAAARVAMVVLLCAACALLLAALYIILGNKMNPRGPGGPHQCDGDSDVEMAPPWELTLYQKLDLSIADVVRCLTVANVVGRGRSGTKLLFYDYLPSGTLGTLLHECNSAIVEWESRFNIALGVAEGLAYLHHDCVPPIIHRDVKAHNILLGDRYEACLADFGLARLVEDDDGNGSFSANPQFAGSYGYIAPEYACMLKITEKSDVYSFGVVLLEIITGKKPVDPSFPDGQHVIQWVREQLKSKRDPVQILDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAVLLREIRHEPSTGTEPHKPNSNGSKKPEAPAYSSQLLLLQGSSQYSLAYSSSSAGYNVNNDASV* 787
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 10369942 10373977 - Vvi17g792 Vvi17g792 779489

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g792 786 Pfam Leucine rich repeat 192 252 IPR001611 GO:0005515
Vvi17g792 786 Gene3D Ribonuclease Inhibitor 3 154 IPR032675 -
Vvi17g792 786 Gene3D Ribonuclease Inhibitor 155 420 IPR032675 -
Vvi17g792 786 SMART serkin_6 441 725 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g792 786 SUPERFAMILY L domain-like 5 295 - -
Vvi17g792 786 SUPERFAMILY RNI-like 233 410 - -
Vvi17g792 786 SMART LRR_typ_2 95 119 IPR003591 -
Vvi17g792 786 SMART LRR_typ_2 288 312 IPR003591 -
Vvi17g792 786 SMART LRR_typ_2 239 263 IPR003591 -
Vvi17g792 786 SMART LRR_typ_2 143 167 IPR003591 -
Vvi17g792 786 SMART LRR_typ_2 191 215 IPR003591 -
Vvi17g792 786 SMART LRR_typ_2 336 360 IPR003591 -
Vvi17g792 786 Pfam Protein tyrosine and serine/threonine kinase 501 722 IPR001245 GO:0004672|GO:0006468
Vvi17g792 786 SUPERFAMILY Protein kinase-like (PK-like) 515 725 IPR011009 -
Vvi17g792 786 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 288 405 - -
Vvi17g792 786 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 518 772 - -
Vvi17g792 786 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 158 287 - -
Vvi17g792 786 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 391 517 - -
Vvi17g792 786 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 2 161 - -
Vvi17g792 786 Gene3D Transferase(Phosphotransferase) domain 1 526 747 - -
Vvi17g792 786 Pfam Leucine rich repeat N-terminal domain 6 45 IPR013210 -
Vvi17g792 786 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 391 517 - -
Vvi17g792 786 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 288 405 - -
Vvi17g792 786 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 2 161 - -
Vvi17g792 786 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 158 287 - -
Vvi17g792 786 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 518 772 - -
Vvi17g792 786 MobiDBLite consensus disorder prediction 729 755 - -
Vvi17g792 786 ProSiteProfiles Protein kinase domain profile. 421 733 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g792 786 ProSitePatterns Serine/Threonine protein kinases active-site signature. 570 582 IPR008271 GO:0004672|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g792 - - - vvi:100262226 851.277
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g792 . . . . . . . . . Cmo18g00141 Cma10g00113 Cma11g00083 Car10g00102 . . . . Bhi02g00489 . . . . . . Cla06g01679 . . . . . . Cone2ag0922 Cone16ag0085 . . Lsi02g00394 Csa01g00871 . Cme12g01675 . . . . . . . . . Cmo10g00117 Cmo11g00084 . Cma18g00183 . . . Cpe18g00852 Bhi08g01644 . . . . . . Cla01g01317 . . . . . . Lsi06g01569 Csa01g00130 Chy02g02597 Cme02g01993
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002837 0 2 0 0 0 2 3 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 1 2 2 3 2 3 2 1 56
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76331 PF07714 PK_Tyr_Ser-Thr 2.40E-28 CL0016 Vvi PK