Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g795 ATGTCATCGACCTTAGAAATCGAAGCTCGAGATGTCATTAAGATCGTGCTTCAGTTTTGTAAAGAAAATTCCTTGCACCAAACGTTTCAGACATTACAAAGTGAGTGTCAGGTATCTTTGAATACGGTCGACAGCCTCGAGACATTTATTGCTGATATTAATAGTGGAAGGTGGGATGCAATATTGCCTCAAGTAGCACAACTTAAGCTTCCCAGGAAGAAACTGGAGGATTTGTATGAGCAGATTGTTTTAGAAATGATTGAACTGCGAGAATTGGATACTGCACGTGCTATTTTAAGACAAACTCAGGCAATGGGTGTCATGAAACAAGAGCAGCCTGAAAGATACTTGCGTCTTGAGCATCTTCTTGTTCGAACTTATTTTGATCCACATGAGGCTTATCAAGATTCAACAAAAGAGAAACGTCGTGCTCAAATTGCCCAAGCCCTCGCTGCTGAAGTTTCTGTAGTTCCTCCATCACGATTAATGGCTCTCATTGGTCAGGCTCTGAAGTGGCAGCAACATCAAGGGTTACTTCCACCAGGAACACAGTTTGACTTGTTCCGAGGAACAGCTGCTATGAAACAAGATGTAGATGATATGTATCCAACAACTCTCGGGCACACCATCAAGTTTGGAACAAAAAGTCATGCAGAATATGCTCGGTTTTCTCCAGATGGGCAGTTTCTTGTGTCTTGCTCCGTGGATGGATTTATTGAGGTTTGGGACCATATAAGTGGGAAACTTAAGAAGGATCTTCAGTATCAGGCTGATGAAACCTTTATGATGCATGATGATGCTGTCCTTTGTGTTGATTTTAGCAGAGATTCGGAGATGCTTGCATCTGGATCACAAGATGGAAAAATCAAAGTGTGGCGTATAAGGACTGGTCAATGCTTACGCCGACTTGAACGTGCACATTCCCAAGGTGTTACAAGTCTTGTTTTCTCTCGAGATGGAAGTCAGATACTAAGTGCATCCTTTGACAGCACTGCAAGAATCCATGGACTGAAGTCTGGGAAACTGTTAAAGGAATTCCGTGGCCATTCATCTTATGTGAATGATGCTATATTTACAAATGACGGAGGTCGTGTTGTTACTGCCTCCAGTGATTGCACAGTAAAGGTCTGGGATGTGAAGACAACCGACTGTTTGCAGACATTTAAGCCACCACCTCCTTTAAGGGGAGGTGACGCATCTGTAAATGGCGTTCATCTTTTCCCCAAAAATACAGACCATATTATTGTGTGTAACAGGACATCATCAATATACCTTATGACACTTCAAGGACAGGTTGTGAAGAGCTTCTCTTCTGGTAAAAGAGAAGGTGGAGATTTTGTTGCAGCCTGTGTCTCACCCAAAGGAGAATGGATTTATTGTGTTGGTGAAGACAGGAATATCTACTGCTTCAGCTACCAATCGGGTAAATTAGAGCATCTAATGAAGGTGCATGAAAAGGATGTAATCGGCGTAACCCATCATCCCCACAGGAATCTGGTTGCTACATATAGTGAAGACAGCACCATGAAATTATGGAAACCTTGA 1545 42.46 MSSTLEIEARDVIKIVLQFCKENSLHQTFQTLQSECQVSLNTVDSLETFIADINSGRWDAILPQVAQLKLPRKKLEDLYEQIVLEMIELRELDTARAILRQTQAMGVMKQEQPERYLRLEHLLVRTYFDPHEAYQDSTKEKRRAQIAQALAAEVSVVPPSRLMALIGQALKWQQHQGLLPPGTQFDLFRGTAAMKQDVDDMYPTTLGHTIKFGTKSHAEYARFSPDGQFLVSCSVDGFIEVWDHISGKLKKDLQYQADETFMMHDDAVLCVDFSRDSEMLASGSQDGKIKVWRIRTGQCLRRLERAHSQGVTSLVFSRDGSQILSASFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGGRVVTASSDCTVKVWDVKTTDCLQTFKPPPPLRGGDASVNGVHLFPKNTDHIIVCNRTSSIYLMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNIYCFSYQSGKLEHLMKVHEKDVIGVTHHPHRNLVATYSEDSTMKLWKP* 515
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 10423629 10448147 - Vvi17g795 Vvi17g795 779492

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g795 514 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 481 514 - -
Vvi17g795 514 ProSiteProfiles Trp-Asp (WD) repeats profile. 304 345 IPR001680 GO:0005515
Vvi17g795 514 SMART ctlh 42 94 IPR006595 -
Vvi17g795 514 SMART Lish 8 40 IPR006594 GO:0005515
Vvi17g795 514 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 261 298 - -
Vvi17g795 514 Coils Coil 72 92 - -
Vvi17g795 514 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 346 381 - -
Vvi17g795 514 ProSitePatterns Trp-Asp (WD) repeats signature. 365 379 IPR019775 -
Vvi17g795 514 SMART WD40_4 296 336 IPR001680 GO:0005515
Vvi17g795 514 SMART WD40_4 381 427 IPR001680 GO:0005515
Vvi17g795 514 SMART WD40_4 254 293 IPR001680 GO:0005515
Vvi17g795 514 SMART WD40_4 339 378 IPR001680 GO:0005515
Vvi17g795 514 SMART WD40_4 429 471 IPR001680 GO:0005515
Vvi17g795 514 SMART WD40_4 203 243 IPR001680 GO:0005515
Vvi17g795 514 SMART WD40_4 474 513 IPR001680 GO:0005515
Vvi17g795 514 ProSiteProfiles Trp-Asp (WD) repeats profile. 346 387 IPR001680 GO:0005515
Vvi17g795 514 Gene3D - 192 514 IPR015943 GO:0005515
Vvi17g795 514 PANTHER WD40 REPEAT PROTEIN 5 514 IPR045184 GO:0000398
Vvi17g795 514 Pfam WD domain, G-beta repeat 264 292 IPR001680 GO:0005515
Vvi17g795 514 Pfam WD domain, G-beta repeat 340 378 IPR001680 GO:0005515
Vvi17g795 514 Pfam WD domain, G-beta repeat 222 243 IPR001680 GO:0005515
Vvi17g795 514 Pfam WD domain, G-beta repeat 297 334 IPR001680 GO:0005515
Vvi17g795 514 CDD WD40 221 513 - -
Vvi17g795 514 Pfam LisH-like dimerisation domain 9 38 - -
Vvi17g795 514 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Vvi17g795 514 ProSiteProfiles Trp-Asp (WD) repeats profile. 481 514 IPR001680 GO:0005515
Vvi17g795 514 SUPERFAMILY WD40 repeat-like 212 513 IPR036322 GO:0005515
Vvi17g795 514 PRINTS G protein beta WD-40 repeat signature 280 294 IPR020472 -
Vvi17g795 514 PRINTS G protein beta WD-40 repeat signature 365 379 IPR020472 -
Vvi17g795 514 PRINTS G protein beta WD-40 repeat signature 500 514 IPR020472 -
Vvi17g795 514 ProSiteProfiles Trp-Asp (WD) repeats profile. 261 302 IPR001680 GO:0005515
Vvi17g795 514 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 42 94 IPR006595 -
Vvi17g795 514 PANTHER WD40 REPEAT-CONTAINING PROTEIN SMU1 5 514 - -
Vvi17g795 514 ProSiteProfiles Trp-Asp (WD) repeats profile. 223 243 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g795 K13111 SMU1; WD40 repeat-containing protein SMU1 - vvi:100241550 1039.25
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g795 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005835 1 1 1 1 1 1 2 1 1 1 1 1 2 0 1 2 1 2 3 1 1 1 1 1 1 1 1 2 4 1 39