Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g801 ATGGCTTCATCCAGCTCTTACAACTCTCCTTGTGCTGCCTGCAAGTTCCTGAGGAGGAAATGCATGCCTGGATGCATCTTTGCACCGTACTTCCCACCAGAGGAGCCGCAGAAATTTGCCAATGTTCACAAGATCTTTGGTGCAAGCAATGTCACAAAGCTCCTGAATGAGCTCCTCCCTCACCAAAGAGAGGATGCAGTTGAGAGGCTCCAGAAGGAGCTTGATGCAGCAAATGCTGATCTGATTCGTTACGCCTGCAATGAGATGTCATCGCAATTGCCTTCACCATCACTAGTGAGGTCTACTAGTAGAAGGATTGGTAATGAAGGAGGAGGAAGCTACTTTCAAAATCCTGGTTACTCCCACCCATATTCTCTTCCATGGGATGATAACCCTTCAGGAAATATGAATGAAAGTGGAGGAGGAGGAGGGGGAGGCAGTATGACCACTACTTTGCTTTCTCAGTAA 468 47.65 MASSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVERLQKELDAANADLIRYACNEMSSQLPSPSLVRSTSRRIGNEGGGSYFQNPGYSHPYSLPWDDNPSGNMNESGGGGGGGSMTTTLLSQ* 156
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 10578568 10581053 - Vvi17g801 Vvi17g801 779498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g801 155 Coils Coil 67 87 - -
Vvi17g801 155 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Vvi17g801 155 MobiDBLite consensus disorder prediction 128 155 - -
Vvi17g801 155 MobiDBLite consensus disorder prediction 95 120 - -
Vvi17g801 155 PANTHER ELONGATED PETIOLULE 1 67 142 - -
Vvi17g801 155 PANTHER ELONGATED PETIOLULE 1 1 69 - -
Vvi17g801 155 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 69 - -
Vvi17g801 155 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 67 142 - -
Vvi17g801 155 Pfam Lateral organ boundaries (LOB) domain 10 84 IPR004883 -
Vvi17g801 155 MobiDBLite consensus disorder prediction 95 155 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi14g1311 Vvi17g801 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14236 PF03195 LOB 1.60E-25 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g801 - - vvi:100267218 279.256