Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g803 ATGAAACTTCAAATATTGAGGCTCCCGCAATTCTCTAAGCTTCTCTTTGAACTCTCAAAGATTCATCAAACCTTACCCAGAACCAAAAAATTACATGCCTTCATAATCAGGAACCACCTCTCAGATGACCCATTTTATGCTACTAGAATCCTCAGATTCTATGCTATTAACAGTGATCTGTGCTCTGCCCGTAACCTGTTCGATGGAACTTCTTATAGAAGCGTCTACCTTTGGAATTCTGTTATCAGAGCTTATGCAGGAGAGCATCAATTTGATGATGCATTGTTGCTGTTTGCAAAGATGCTTAGAACAGAAATCAAACCTGATAGCTTCACCTTTGCATGTGTTTTGCGGGCGTGTGCTGAAAATTTTGATCCAGATGGATTGAGAGTGGTACATGGAGGAGTTGTGGTTTCCGGGTTAGGATTTGACTCAGTTTGTGGTAGTGCACTGGTGACTGCCTATTCAAAACTATGCATGGTTGATGAAGCAAGTAGGGTATTCTATGGAATGGCAGAGCCGGATTTAGTTTTGTGGAATGCAATGGCTGCTGGTTATGGTTATTGTGGATTCTGGGATAAAGGGCTGCAACTGTTTAGTGCAATGCGAAGCATGGGGGAGCAGCCAGATAGTTACACTATGGTAGGATTGATCTCAGGCTTAGCAGATCCAAGCTTGCTTGGAATAGGAAAAGGAATTCATGGTTTTTGTTTGAAAAGTAGTTTTGATTGTAATGATCATGTGGGCAGTGCACTTGTGAGCATGTACTCAAGATGTCATTGCTTAAATTCAGCATATGGAGTTTTTACCATTTTATCTCAACCTGATTTAATTCATGGATATGTTCTCCGACATGGGCTTGAGTCTGAAGTCATGATTTCCTCTGCTCTCATTGACATGTACTCTAAGTGTGGTTTTGTAAACTTGGGAGTTAGGGTATTTGACTCCATGCCTAACCGAAATACAGTGTCCTACAATTCGATGATTTTAGGTCTTGGAATACATGGACTTGCCCCACAGGCCTTCAAAATGTTTGAAGAGGTATTAGAGAAAGGATTTAAACCTGATGAATCCACATTCTCTGCTCTGCTCTGTACTTGCTGTCATGCTGGCCTTGTTAAAAATGGAAGGGAAATTTTCAGTAGAATGACAGAAGAGTTTCACATCCAAGCTAGAACTGATCATTATGTTCACATGGTAAAGCTTCTTGGAATGGCTGGAGAGTTGCAAGAGGCTTACGATCTTATCCTGTCATTGCAGCAACCAGTAGATTCTGGCATTTGGGGAGCACTGTTGTCATGCTGCAATTTTCATGGAAATCCTGAGCTGGCAGAAATTGTGGCTCAGCAGCTCTTTGAAAATAAACCAGAGAAAAGTGCATACAGAGTAATGCTTTCCAATATATATGCTGGTGATGATAGATGGGATGATGTGAAGAAGTTGAGAGATGATATTCAAGAAGCGGGAATAAAGAAAATGCCGGGGCTTAGCTGGATTGGAGTTGGTCGTATCTAA 1515 41.25 MKLQILRLPQFSKLLFELSKIHQTLPRTKKLHAFIIRNHLSDDPFYATRILRFYAINSDLCSARNLFDGTSYRSVYLWNSVIRAYAGEHQFDDALLLFAKMLRTEIKPDSFTFACVLRACAENFDPDGLRVVHGGVVVSGLGFDSVCGSALVTAYSKLCMVDEASRVFYGMAEPDLVLWNAMAAGYGYCGFWDKGLQLFSAMRSMGEQPDSYTMVGLISGLADPSLLGIGKGIHGFCLKSSFDCNDHVGSALVSMYSRCHCLNSAYGVFTILSQPDLIHGYVLRHGLESEVMISSALIDMYSKCGFVNLGVRVFDSMPNRNTVSYNSMILGLGIHGLAPQAFKMFEEVLEKGFKPDESTFSALLCTCCHAGLVKNGREIFSRMTEEFHIQARTDHYVHMVKLLGMAGELQEAYDLILSLQQPVDSGIWGALLSCCNFHGNPELAEIVAQQLFENKPEKSAYRVMLSNIYAGDDRWDDVKKLRDDIQEAGIKKMPGLSWIGVGRI* 505
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 10603918 10605601 - Vvi17g803 Vvi17g803 779500

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g803 504 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 74 108 IPR002885 -
Vvi17g803 504 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 175 209 IPR002885 -
Vvi17g803 504 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 321 355 IPR002885 -
Vvi17g803 504 Pfam PPR repeat family 174 222 IPR002885 -
Vvi17g803 504 Pfam PPR repeat family 74 121 IPR002885 -
Vvi17g803 504 Pfam PPR repeat family 320 369 IPR002885 -
Vvi17g803 504 Gene3D Tetratricopeptide repeat domain 377 501 IPR011990 GO:0005515
Vvi17g803 504 Pfam E motif 438 499 IPR046848 -
Vvi17g803 504 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 278 500 - -
Vvi17g803 504 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 11 278 - -
Vvi17g803 504 PANTHER OS01G0545900 PROTEIN 278 500 - -
Vvi17g803 504 PANTHER OS01G0545900 PROTEIN 11 278 - -
Vvi17g803 504 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 356 386 IPR002885 -
Vvi17g803 504 Pfam PPR repeat 149 171 IPR002885 -
Vvi17g803 504 Gene3D Tetratricopeptide repeat domain 53 132 IPR011990 GO:0005515
Vvi17g803 504 Gene3D Tetratricopeptide repeat domain 236 376 IPR011990 GO:0005515
Vvi17g803 504 Gene3D Tetratricopeptide repeat domain 133 227 IPR011990 GO:0005515
Vvi17g803 504 TIGRFAM PPR: pentatricopeptide repeat domain 323 357 IPR002885 -
Vvi17g803 504 TIGRFAM PPR: pentatricopeptide repeat domain 177 210 IPR002885 -
Vvi17g803 504 TIGRFAM PPR: pentatricopeptide repeat domain 76 110 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g803 - - - vvi:100253585 966.066
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g803 . . . . . . . . . . Cma10g00102 . Car10g00091 . . . . Bhi02g00502 . . . Hepe09g0226 . . . . . . . . . . . Cone13ag0161 . . . . . Blo13g00138 . . . . . . . . Cmo10g00106 . . . . . . . . . . . . . . . . . . . . . . Csa01g00120 Chy02g02607 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014459 0 1 1 0 0 1 1 0 0 1 1 1 0 0 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 21