Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g806 ATGGCGCATAACTTGGTTGTTCATTATGCGCTTCATCGCCGGATGGAGATCAACCGCCCTTTTCCTGCTGGTCCAGATGATATCCGACGATACTTGAAGCGCTTCAATCTCAACCGCCGTGACGCTGATATTGCTCTGAATTGGGCGGGTGGGTTGCATCACGCCAAGAAGTCCGAAGCTTCCGGCTTTTGTTATGTCAACGACATCGTTCTGGGTATTCTCGAGCTGCTCAAGGTCCACAGGCGTGTATTATATGTAGATATTGACATCCACCATGGAGATGGTGTTGAGGAGGCATTTTTCACCACTGACAGAGTCATGACTGTGTCTTTCCACAAATTTGGGGATTTCTTTCCAGGGACCGGGCACATTAGAGACATAGGGGTGGGGCCTGGGAAGTACTATGCCCTGAATGTTCCTTTAAATGATGGAATGGATGATGAGAGTTTTCGTGGTCTATTTCGGCCCATTATTCAAAAAGTCATGGCGGTTTATCAGCCAGATGCAGTTGTTCTCCAATGTGGAGCTGATTCTTTGTCTGGTGATAGGTTGGGATGCTTCAATTTGTCTGTGAATGGTCATGCAGATTGCCTTCGTTTTCTTAGATCTTTCAATGTTCCTCTTATGGTCTTGGGAGGAGGAGGGTATACAATCCGGAATGTTGCCCGTTGCTGGTGCTATGAGACGGCAGTAGCAGTTGGGGTGGAACCTGATAATAAATTGCCTTATAATGAATATTATGAGTATTTTGGACCAGATTATACTCTACATATTGAACCATGCAACATGGAGAACCAAAACTCGCCAAAAGATTTGGAGAAAATAAGGAACATGCTACTGGAGCAACTTTCTAGGTTACCACATGCACCCAGTGTACCATTTCAAACAACACCACCTATTACAAAAGTTCCAGAGGAGGAGGAAGAGGATATGGATAAAAGACCTAAACCTCGCATTTGGAATGGAGAGGACTGTGAGTCTGATCCCGATGAAGATGAGAAGCCTCGAGCTCAATTCTCAAACACCAATCATCATCCTACTTCAAATGTTGAGATGAGGGGTGTCACTGGAAAAATCAAAGAAGAGAAAACAACATAA 1098 44.72 MAHNLVVHYALHRRMEINRPFPAGPDDIRRYLKRFNLNRRDADIALNWAGGLHHAKKSEASGFCYVNDIVLGILELLKVHRRVLYVDIDIHHGDGVEEAFFTTDRVMTVSFHKFGDFFPGTGHIRDIGVGPGKYYALNVPLNDGMDDESFRGLFRPIIQKVMAVYQPDAVVLQCGADSLSGDRLGCFNLSVNGHADCLRFLRSFNVPLMVLGGGGYTIRNVARCWCYETAVAVGVEPDNKLPYNEYYEYFGPDYTLHIEPCNMENQNSPKDLEKIRNMLLEQLSRLPHAPSVPFQTTPPITKVPEEEEEDMDKRPKPRIWNGEDCESDPDEDEKPRAQFSNTNHHPTSNVEMRGVTGKIKEEKTT* 366
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 10614426 10630758 - Vvi17g806 Vvi17g806 779503

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g806 365 PIRSF HDAC_I_euk 33 364 IPR003084 GO:0004407|GO:0016575
Vvi17g806 365 PIRSF HDAC_I_euk 1 35 IPR003084 GO:0004407|GO:0016575
Vvi17g806 365 PRINTS Histone deacetylase signature 28 48 IPR003084 GO:0004407|GO:0016575
Vvi17g806 365 PRINTS Histone deacetylase signature 69 85 IPR003084 GO:0004407|GO:0016575
Vvi17g806 365 PRINTS Histone deacetylase signature 128 141 IPR003084 GO:0004407|GO:0016575
Vvi17g806 365 PRINTS Histone deacetylase signature 145 163 IPR003084 GO:0004407|GO:0016575
Vvi17g806 365 SUPERFAMILY Arginase/deacetylase 1 285 IPR023696 -
Vvi17g806 365 PANTHER HISTONE DEACETYLASE 36 337 - -
Vvi17g806 365 PANTHER HISTONE DEACETYLASE 1 31 - -
Vvi17g806 365 PANTHER HISTONE DEACETYLASE 6 1 31 - -
Vvi17g806 365 PANTHER HISTONE DEACETYLASE 6 36 337 - -
Vvi17g806 365 Gene3D Histone deacetylase domain 32 293 IPR037138 -
Vvi17g806 365 Pfam Histone deacetylase domain 41 230 IPR023801 -
Vvi17g806 365 PRINTS Histone deacetylase superfamily signature 50 73 IPR000286 -
Vvi17g806 365 PRINTS Histone deacetylase superfamily signature 82 97 IPR000286 -
Vvi17g806 365 PRINTS Histone deacetylase superfamily signature 167 177 IPR000286 -
Vvi17g806 365 MobiDBLite consensus disorder prediction 302 324 - -
Vvi17g806 365 MobiDBLite consensus disorder prediction 286 365 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g806 K06067 HDAC1_2; histone deacetylase 1/2 [EC:3.5.1.98] - vvi:100244903 740.725
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g806 . . . Bda15g00544 Bpe12g00667 . . . . . . Cma11g00075 Car10g00090 Car11g00067 . . Cpe04g01577 Bhi02g00504 Tan09g2293 . . Hepe09g0228 . . Cla06g01690 . . . . . . Cone2ag0926 Cone16ag0079 . . . . . . Blo13g00141 . . . . . . Bma08g00086 . Cmo10g00105 Cmo11g00076 . . . . . Cpe18g00862 . . . . . . . . . . . . . . Lsi06g01584 Csa01g00119 Chy02g02608 Cme02g02005
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000680 1 7 2 3 3 3 4 3 3 2 2 3 4 3 3 4 3 5 4 2 3 3 3 3 3 2 3 5 7 3 99