Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g809 ATGCACCATCACCGAATCCTCTTCGACAAGTACCATCCTGGTTACTTCGGCAAGGTCGGTATGCGATACTTCCACAAGCTTCGTAATAAGTTCTACTGCCCGATCGTCAACATCGACAAGCTCTGGTCCCTTATCCCCCAAGATGTTTTGGGTAAAGGAGCTTTGCCGGAGTCGAAGCCGATTGTTGTGAAGGCCAAGCTGGTGTCGAAGATCGCCGAGAAGAAGATTAAGGAGGCCGGCGGTGCCGTTGTTCTCACTGCCTAG 264 51.89 MHHHRILFDKYHPGYFGKVGMRYFHKLRNKFYCPIVNIDKLWSLIPQDVLGKGALPESKPIVVKAKLVSKIAEKKIKEAGGAVVLTA* 88
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 10706428 10707300 - Vvi17g809 Vvi17g809 779506

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g809 87 Gene3D - 21 47 - -
Vvi17g809 87 PANTHER 60S RIBOSOMAL PROTEIN L27A 1 48 - -
Vvi17g809 87 PANTHER 60S RIBOSOMAL PROTEIN L27A 49 87 - -
Vvi17g809 87 SUPERFAMILY Ribosomal proteins L15p and L18e 2 85 IPR036227 -
Vvi17g809 87 Pfam Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A 49 84 IPR021131 -
Vvi17g809 87 Gene3D - 48 87 - -
Vvi17g809 87 PANTHER 60S RIBOSOMAL PROTEIN L27A-3 49 87 - -
Vvi17g809 87 PANTHER 60S RIBOSOMAL PROTEIN L27A-3 1 48 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g809 K02900 RP-L27Ae, RPL27A; large subunit ribosomal protein L27Ae - vvi:100250040 169.859
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi14g1302 Vvi17g809 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g809 Blo04g00722 . . . . Bpe13g00227 . . Cmo13g00894 Cmo18g00149 . . . . . Cpe20g00261 . . . . . . . . . . . . . . . . . Cone13ag0164 Cone19ag0161 Lsi02g00408 Csa01g00880 Chy12g01243 Cme12g01666 . . . Bda14g00800 . Bpe15g00650 Bma03g00772 . Sed01g1625 . . Cma13g00863 Cma18g00188 Car13g00706 Car18g00180 Cpe09g01007 . Bhi08g01654 Tan05g1976 Cmetu12g0479 Lac10g0488 Hepe07g2201 . . Cla01g01327 Cam01g1401 Cec01g1433 Cco01g1490 Clacu01g1393 . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001100 5 2 4 3 4 2 4 2 2 2 2 2 3 2 2 4 1 4 4 1 2 2 3 2 2 2 2 4 3 2 79