Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g810 ATGCTTCAAACTGCTTTTTTGTTCGTTTTGCCTAATTTTTGCTTTCTGTTGATTGTAGATGTCAAGGACATAAAATGTGTGATCAATTATGATTTCCCATCAAGCCTCGAAGATTATGTCCACAGGATTGGCCGAACAGGTCGTGCAGGGGCCAAGGGAACTGCCATTACCTTTTTTACACATTCAAATGCAAAGTTTGCTAGAGATCTCATCAAGATTCTGCAAGAAGCAGGGCAGGTTGTGAGTCCTGCATTGTCTGCCATGGCCCGCTCAAGTGGTTCTGCATTTGGAGGTTCCGGAGGCAACTTCCGATCAAGGGGACGGGGTGGCAGCTTTGGCAACCGAGGTTTGATTTCAGGATCTAATACCATTCCTCTTGGTGCAAGGAGGCCTTGGTAG 399 46.37 MLQTAFLFVLPNFCFLLIVDVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAITFFTHSNAKFARDLIKILQEAGQVVSPALSAMARSSGSAFGGSGGNFRSRGRGGSFGNRGLISGSNTIPLGARRPW* 133
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 10707718 10708704 - Vvi17g810 Vvi17g810 779507

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g810 132 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 20 108 - -
Vvi17g810 132 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1 89 IPR001650 -
Vvi17g810 132 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 40 20 108 - -
Vvi17g810 132 Pfam Helicase conserved C-terminal domain 19 50 IPR001650 -
Vvi17g810 132 Gene3D - 19 93 IPR027417 -
Vvi17g810 132 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 19 87 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g810 K12823 DDX5, DBP2; ATP-dependent RNA helicase DDX5/DBP2 [EC:3.6.4.13] - vvi:100260348 173.326
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g810 . . . . . . . . . . . . . . . . . Bhi02g00508 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo10g00102 . . . . . . . . . . . . . . . . . . . . . Lsi06g01587 Csa01g00116 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0018619 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 1 5