Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g811 ATGAACCATTACGACCTCAGATTCTCCGATCCTCACTCCTATCGCGAACGTAGAAGCGACCTAATGGTGGCACCGCCTCCCGTAGCACCTCCGCCGATGATGGGCGGTGTAGTCGGTGGGCCCAGCCCGACCTACGGACGGGGTGGGCCGGCTTCCTACGGAGGACCTTCGGTTTCTTTCCCTAACGGCGGAAGAGGAGGTGGGGATGTTTCCGGATCTGTGCCTGGCGGAGGGGGTTTCAACGCTTACCCGCCTTTTCAGCCTGGTTCCGGAAGGTTTGAGATTGGCCGGGGTGGCGGTGGCGGTGGCGGAGTAGGAAGGGGGTTTAGTGGAGGGAAAGGTAGTGGTGGAGAGTTCGGTGGAAGAATGGCTAATGGTGATCTTGGAAATAGAAGAGGCGATGGAGATCGAGGTCGTGGTGGTGGTGGTGCTAGGGGCCGAGAAGGTGGGCGAGGTACAGGTGATGGAGGGAGGCGTGCTTATGACTCCGGTCGTGGCGGAGGTAGGACAGGCGGCAGCAGGAGTTCAGATGGTGGCAGAGGTGGTGGCGGTAGTAGGACTTTTGATGGAGGCCATGGTCGCGGCGGTATTAGAAGTTCTGACGCTGGCCGTGGTGGTAGGAGTTTTACCGGAGGCAGGGGTGGTGGAAGGAGTGGTTTTGACGGAGGCCGTGGTGGAGGAAGGGGAGGTAGGCATGGGGGAGCATCGAGAGGGGACTTAGACAACATTGCTCTTCCCAAGCAAGATTTTGGAAGCTTGGTTCCCTTTGAGAAGAATTTTTATATTGAGAGCCCTTCTGTGCAAGCAATGTCGGAGCAAGAAGCAATGCTCTATCGTGCAAGGCGTGAAATCACAGTGGAAGGCTATGATGTCCCGAAGCCTATCCGACACTTTCAAGAGGCAAATTTCCCTGGGTATTGCCTTGAGGTGATTGCTAAATTGGGTTTTGTTGAGCCAACGCCTATTCAGGCTCAAGGATGGCCAATGGCCTTAAAGGGTAGAGATTTAATTGGCATTGCCGAGACTGGCTCAGGGAAGACCTTGGCTTATTTGCTTCCAGCTTTGGTTCATGTTAGTGCACAGCCTCCATTAGTTCGAGGTGAAGGTCCTATTGTGCTAGTGTTAGCACCTACAAGAGAATTGGCTGTTCAGATTCAAGAAGAAGCTCTAAAATTTGGATCATTTACAAAGATTAGGAGCACTTGCATTTATGGTGGTGCTCCAAAGGGACCACAGATTCGTGATCTTCAAAGAGGTGTTGAGATTGTCATTGCTACACCTGGACGATTAATAGATATGCTGGAGGCTCAACATACAAACCTGCGAAGAGTGACTTACCTTGTATTAGATGAGGCTGACCGAATGTTAGACATGGGATTTGAACCTCAGATCAGGAAAATTATTTCCCAAATCCGACCAGATAGACAGACATTATACTGGAGTGCCACATGGCCAAGGGAGGTGGAAACTCTAGCGAGGCAGTTCTTACGTAATCCATACAAGGTAATCATTGGATCCCAAGACCTGAAAGCAAATCAATCTATTCAACAAGTTGTTGAGGTTGTGACAGAGACGGAGAAATATAACAGGTTGATCAGATTGCTCAAAGAAGTGATGGATGGAAGCCGAATCCTGATATTCATGGAGACAAAGAAGGGATGTGACCAAGTTACTAGGCAGATGAGAATGGATGGATGGCCATCTCTATCTATCCATGGTGATAAAAACCAGGCTGAAAGGGACTGGGTCCTTGCAGAGTTTAAAAGTGGCAGAAGTCCTATAATGACTGCCACTGATGTAGCTGCCCGTGGTCTTGGTAGGATTACTGTGTGTTAG 1836 50.54 MNHYDLRFSDPHSYRERRSDLMVAPPPVAPPPMMGGVVGGPSPTYGRGGPASYGGPSVSFPNGGRGGGDVSGSVPGGGGFNAYPPFQPGSGRFEIGRGGGGGGGVGRGFSGGKGSGGEFGGRMANGDLGNRRGDGDRGRGGGGARGREGGRGTGDGGRRAYDSGRGGGRTGGSRSSDGGRGGGGSRTFDGGHGRGGIRSSDAGRGGRSFTGGRGGGRSGFDGGRGGGRGGRHGGASRGDLDNIALPKQDFGSLVPFEKNFYIESPSVQAMSEQEAMLYRARREITVEGYDVPKPIRHFQEANFPGYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVSAQPPLVRGEGPIVLVLAPTRELAVQIQEEALKFGSFTKIRSTCIYGGAPKGPQIRDLQRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSQDLKANQSIQQVVEVVTETEKYNRLIRLLKEVMDGSRILIFMETKKGCDQVTRQMRMDGWPSLSIHGDKNQAERDWVLAEFKSGRSPIMTATDVAARGLGRITVC* 612
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 10708716 10715399 - Vvi17g811 Vvi17g811 779508

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g811 611 CDD DEADc_DDX5_DDX17 308 502 - -
Vvi17g811 611 Gene3D - 509 606 IPR027417 -
Vvi17g811 611 PANTHER LD32873P 251 605 - -
Vvi17g811 611 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 251 605 - -
Vvi17g811 611 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 513 605 IPR027417 -
Vvi17g811 611 CDD SF2_C_DEAD 515 605 - -
Vvi17g811 611 Gene3D - 269 508 IPR027417 -
Vvi17g811 611 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 448 456 IPR000629 -
Vvi17g811 611 Pfam Helicase conserved C-terminal domain 526 605 IPR001650 -
Vvi17g811 611 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 530 611 IPR001650 -
Vvi17g811 611 MobiDBLite consensus disorder prediction 129 144 - -
Vvi17g811 611 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 327 502 IPR014001 -
Vvi17g811 611 SMART ultradead3 315 518 IPR014001 -
Vvi17g811 611 Pfam DEAD/DEAH box helicase 320 491 IPR011545 GO:0003676|GO:0005524
Vvi17g811 611 MobiDBLite consensus disorder prediction 49 242 - -
Vvi17g811 611 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 279 504 IPR027417 -
Vvi17g811 611 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 296 324 IPR014014 GO:0003724
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g811 K12823 DDX5, DBP2; ATP-dependent RNA helicase DDX5/DBP2 [EC:3.6.4.13] - vvi:100260348 927.932
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g811 . . . . . . . . . . Cma10g00099 . Car10g00086 . . . . Bhi02g00510 . . . . . . Cla06g01693 Cam06g1881 Cec06g1928 Cco06g1933 Clacu06g1837 Cmu06g1779 Cre06g2594 Cone2ag0927 . . . . . . . . . . . Bpe07g00856 . . . . Cmo10g00101 . . . . . . Cpe18g00865 . . . . . . . . . . . . . . Lsi06g01588 . Chy02g02611 Cme02g02008
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011968 0 3 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29