Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g812 ATGGAGGAAGAGAATTACAAGAAGCAGGCTGAAGAGTGGCAATATCAAAGCATGCCGATGAAGTCTCCAGAAATAGTGGAGATTGGAGAGGATAGCAAGAGTTTTACAAGCAGCAGAGAGGGAGGCTTTAAGGATGTGTATGTGGCAGTTGGCAGGGATGACTTGGATGTTCTGAAATGGGCTTTAGATCACTCTGTTTCTCCCCAAGCTCGGATTTTCCTTGTTCATGTCTTCCCTCCCCAAACATACATCTCTACACCTGTTGGAAGACTGTCTAGAAGCCAATTGAGCAAAGAACAGCTGAAAGTTTATATCAATGAGGAGAATAACAGGAGGCGAAACCTCTTGCAGAAATACATTCGATTGTGTACTGATGCCAAGGTGACTGTGGACACAATGCTTCTAGAGAGCAACACGACAACCAAAGCAATTCTTGATCTTATTCCAGTCCTAAACATTACCAACCTTGTTATAGGAACCAAAAGGCCGCCTTGCCCAAGGCGATCCTGGAAAAAACTGGGAACGGGAGAGTTCATCCAGAAGAATGCACCTGAATTTTGTGAGGTCACCATTGTTTTTGATGGCAAGAAGGTTCTGGACGGTGAGCAGGTAGGAGAGCTGGTTCATTCATCTCCAGCATCCAGTCACCGTAAACCAGAAACTACTCGAAACTCTGAAAGGAATTTCTTTGAGTGTGCTTGCTTTTCAGGCAAGTTCAACTGA 723 44.67 MEEENYKKQAEEWQYQSMPMKSPEIVEIGEDSKSFTSSREGGFKDVYVAVGRDDLDVLKWALDHSVSPQARIFLVHVFPPQTYISTPVGRLSRSQLSKEQLKVYINEENNRRRNLLQKYIRLCTDAKVTVDTMLLESNTTTKAILDLIPVLNITNLVIGTKRPPCPRRSWKKLGTGEFIQKNAPEFCEVTIVFDGKKVLDGEQVGELVHSSPASSHRKPETTRNSERNFFECACFSGKFN* 241
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 10736575 10738749 - Vvi17g812 Vvi17g812 779509

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g812 240 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 52-LIKE 1 240 - -
Vvi17g812 240 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 52-LIKE 1 240 - -
Vvi17g812 240 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 47 162 - -
Vvi17g812 240 Coils Coil 98 118 - -
Vvi17g812 240 CDD STK_N 46 195 - -
Vvi17g812 240 Gene3D HUPs 46 182 IPR014729 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g812 - - - vvi:100852504 476.092
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g812 Blo04g00721 Blo16g00236 . . . . . . . . . . . . . . . Bhi02g00511 . . . Hepe09g0232 . . Cla06g01694 Cam06g1882 Cec06g1929 Cco06g1934 Clacu06g1838 Cmu06g1780 Cre06g2595 . . Cone13ag0165 Cone19ag0162 . . . . . . . Bda14g00799 . Bpe15g00651 Bma03g00771 . . . . . . . . . . . . . . . . . . . . . . . . . Csa01g00113 Chy02g02612 Cme02g02009
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006923 2 2 2 1 2 2 0 2 2 2 2 2 0 1 1 0 2 2 0 2 2 1 1 0 0 1 0 1 0 1 36