Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g813 ATGGCAAAAGCTACTCTTCTGATTCTCAAATTGTTGATGATCCTAATATGTGCTGGTTGGATTACTCTCTGGATCCTGAAGCCCACCCAACTGTGGACGAAAAAATGGCATACTGCTGAAGATAGTGCGAGAACCACAGTGTTTGGGTACTATGGTCTTAATTTTGTTGTATACACCTTTCCTGTTATTGCTCTGGCTGCAATTGGATTTGTTTACTTGGATTTGCAGTCTAGAGAGTCAAGAAGAAGACAAGCAAGAAGATCAGCCTCAGTTCTTTCCAATCCCCTCGTTGTTAACAATTACCTGGGTGTTCTATCAGCCCTTGAGATTTTAGCAGTGTCCCTCTTCTTCCTCTATCTGGCATGGACTTTCTATGTTCACATCTCCAATGATTTCGAGAAAATGGTACCAGCCAAATCATTGAAGCGGCAGTTCAAATTCCTTAGGGTGGCAACGCGATTTGGTTTGCTGGCAGAAGCCTGCCTGGCTCTGCTACTACTGCCTGTCTTAAGGGGGATGGCCTTGTTTCGGTTTGTTGGCGTACAGTTTGAAGCATCAGTAAGATACCATGTCTGGCTTGGGACTGCAATGATATTTTTTGCCACTTTTCATGGTGTAAGCACCCTTATTGTTTGGGGGATCAAAGACCGGATTCAGGATGAGATGGGAAAATGGCAGAAAACAGGCCGGATTTATCTAGCTGGGGAGATTGCTCTCGTTACAGGCCTAGTTATCTGGATTACGTCACTTCCTCCAATAAGGCGGAAACGGTTTGAAATCTTCTACTACACTCACCACCTGTACATAGTCTTCCTACTATTCTTCTTGTTCCATGGCGGAGATCGTCACTTTTATATGGTTTTTGGTGGGGTTTTTCTGTTTGGCCTTGACAAGCTACTTCGAATCATACAATCAAGACCACAGACTTGCATCCTGTCAGCAAGAGTATTCCCCTGCAAAGCTATAGAGCTTGTTGTAGCAAAAGATCCAGGATTGAAGTATGCCCCAACAAGCATCATATTCATGAAGATACCAAGCATTTCCAGATTTCAGTGGCATTCCTTCAGTATAACTTCCAGCTCAAACATTGATGATAATACTATGTCTGTCATAATCAAATGTGGAGGATGGTGGACAAACTCCCTGAGTGACATAATACATGCTGAGCTAGACTCAGGTTCCAATCAGATGAAGTGCATCCCAATTGCAATTGAAGGCCCTTATGGACCTGCCTCACTGGACTTCTTAAGCTATGAAAGTCTACTTCTGGTAGCCGGAGGAGTTGGGATAACCCCATTTCTGAGCATTTTGCAGGAAATTACTTCCACACAGAGCAGCATCAGATATAGATTCCCCAGAAGAATTGAACTTTTATATATTATGAAGAAATCCCAAGATATATGTCTGTTAAACCCGATATTGCATCTACTCCAGAACCAGTTAGCTGAACAATGGCATCTAAAGCTAAAAGTGTTTGTAACCCAAGAAGAAGAATGTGGTGCAACCATAAGAGATCTTCTGAATGAGTTTTGTCAAGTCCAAGTAGTAAACTTTGCCTCAAAATGTTCGAGTTATGCAGCAAATGGACTTGAAAATTTGCTTTGGATGGCTGCCATGGCTGGGTTTTCCTCAGTCATGTTCCTTGTTTTTCTTTCTTCTCTCAACCATGCCTTTCTTCCTTCCCAAGATAAGTCCTCCAAAGAGAAAAGCCCTTCTTGGGTTGCTGACATACTTCTCATATGTTCCTTCATCATAGCTATTCTATGCAGCACCATAGTGGCAATTGTCTTGAGATGGAGAAAGCTGAGAAGAGAGATTCCACCAGTCTCTCAAAAGGAAGGCAAAGCCAAGGAGGGTTTGATGGACACAAGGGGCACTGCTCTTGAGGAGCATGAAATCCATTTTGGAGGAAGGCCTAATTTCCAAGATATATTTTCCAAGTTTCCAAAAGAAACTCGTGGATCGAATATAGGAGTCCTGGTTTGTGGCCCGGAAACAATGAAAGAATCAGTGGCATCAATATGCAGTCAAACCTCCCAATGCTGCAACATGGGAAATGATCAGAAAAGGAAGTCACACTTCAGTTTCCACTCCCTCAACTTCACACTCTAG 2112 42.85 MAKATLLILKLLMILICAGWITLWILKPTQLWTKKWHTAEDSARTTVFGYYGLNFVVYTFPVIALAAIGFVYLDLQSRESRRRQARRSASVLSNPLVVNNYLGVLSALEILAVSLFFLYLAWTFYVHISNDFEKMVPAKSLKRQFKFLRVATRFGLLAEACLALLLLPVLRGMALFRFVGVQFEASVRYHVWLGTAMIFFATFHGVSTLIVWGIKDRIQDEMGKWQKTGRIYLAGEIALVTGLVIWITSLPPIRRKRFEIFYYTHHLYIVFLLFFLFHGGDRHFYMVFGGVFLFGLDKLLRIIQSRPQTCILSARVFPCKAIELVVAKDPGLKYAPTSIIFMKIPSISRFQWHSFSITSSSNIDDNTMSVIIKCGGWWTNSLSDIIHAELDSGSNQMKCIPIAIEGPYGPASLDFLSYESLLLVAGGVGITPFLSILQEITSTQSSIRYRFPRRIELLYIMKKSQDICLLNPILHLLQNQLAEQWHLKLKVFVTQEEECGATIRDLLNEFCQVQVVNFASKCSSYAANGLENLLWMAAMAGFSSVMFLVFLSSLNHAFLPSQDKSSKEKSPSWVADILLICSFIIAILCSTIVAIVLRWRKLRREIPPVSQKEGKAKEGLMDTRGTALEEHEIHFGGRPNFQDIFSKFPKETRGSNIGVLVCGPETMKESVASICSQTSQCCNMGNDQKRKSHFSFHSLNFTL* 704
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 10745401 10748530 + Vvi17g813 Vvi17g813 779510

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g813 703 SFLD Ferric Reductase Domain 29 703 - -
Vvi17g813 703 PANTHER FERRIC REDUCTION OXIDASE 8, MITOCHONDRIAL 1 702 - -
Vvi17g813 703 CDD NOX_Duox_like_FAD_NADP 311 500 - -
Vvi17g813 703 Pfam Ferric reductase like transmembrane component 155 275 IPR013130 -
Vvi17g813 703 Pfam FAD-binding domain 312 412 IPR013112 GO:0016491
Vvi17g813 703 PANTHER NADPH OXIDASE 1 702 - -
Vvi17g813 703 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 402 676 IPR039261 -
Vvi17g813 703 Pfam Ferric reductase NAD binding domain 418 676 IPR013121 GO:0016491
Vvi17g813 703 Gene3D - 561 701 IPR039261 -
Vvi17g813 703 Gene3D - 402 532 IPR039261 -
Vvi17g813 703 SFLD Ferric reductase subgroup (FRE) 6 702 - -
Vvi17g813 703 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 295 414 IPR017927 GO:0016491
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g813 K00521 E1.16.1.7; ferric-chelate reductase [EC:1.16.1.7] - vvi:100241516 1358.58
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g813 . . . . . . . . . . Cma10g00097 . Car10g00085 . . . . . . . . . . . . . . . . . . Cone2ag0929 Cone16ag0077 . . . . . . . . . . . . . . . Cmo10g00100 . . . . . . Cpe18g00866 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011006 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 31