Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g818 ATGAGGCTTTATGCGTACGTGTTGGAGGGTAGGGACTTGTGTGTGGAGGACTCCTATGTGAAGCTTCAGCTGGGGAAGTTCAAGTCCAAGACTAGAGTGTTGAGGAGGAGCAGAAACCCGGTTTGGAATGAGGAGTTTGCGTTCAGGGTTCATGACGTGGGTGGTGAGCTCATTCTCTCTGTACTTCACCATGATGATGACTCCGGATTCTTCAACTCCTCCAATGAATTAGTGGGTCGTGTTCGTATTCCTGTTTCGGCGGTGCTAGCAAAAGAGAATCAGACCTTGCCGCCCACTTGGTTTTCTCTTGAAAGGGGTAGAAGTGGGAAATTTATCAGCAAGGAATATGCAGGGAAAATTCTTCTTACTATTTCTCTGCATGGAAGAAGTCAAGACACTACTGCTGATCACCCCCTATATGCACATTCAAGGGTCAAAACTAGGGACTTCAAAGAATGGGAAGGACTAGTTGAATCTGAAGATATTGTCAGCTCCAACACTTCAACCTGGAAGGTTCCAGAAGGGAAACAGTTGATGAAGGCTATTGCGAGCCGCTTAGAGAAGCTGCTTGGTAAGAATGAGGAAACCTCAAAAATGGATGACTCCTCAGAGGTATCCAGTATACCTTCTGATTATGAGGATTGCATAGAGGAACAACGACCCTCCTGTTGTAGCTTTGAAGAAGCTATTGAGTTGATGCAGTCTAGGAATGGAGAACAAGAAATGCCAGAGAACCTGCAGGGGGGCATTCTTCTTGATCAGACATATATTGTGGCATCTAAAGTTCTTAATATGCTTCTCTTTGCACCCAATTCACAGTTCAGGCAAGATCTGGCAGAACTTCAGAGAACAACAAACATGAAAGAGGGGCCTTGGACTTGGAAATCAGGGGCGTTGTCATGTTTAACACGAGTTGTTAGCTATACACAAGCTGCAACGAAATTAGTCAAGGCTGTTGACGCCTTGGAGGAGCAAACATATATTAAAGCAGATGGTAGAGAATTTGCTGTCTTGGTAAATGTGGATACTCCAGATGTTCCATATGGAAATTCATTCAAGGTTGAGTTGCTTTACAAAATAATGCCTGGACCGGAGCTATCTTCAGGAGAAGAATCCTCTCATCTTGTAGTGTCCTGGGGTCTGAGCTTTTCCCAGAACACAATAATGAGAGGCATGATTGAAGGAGGAGCTCGGCAGGGATTGAAGGAGAGTTTTGACCAGTTTGCAAATCTGCTTGCTCAGAATTTTAAGACGCTGGGTTCCATAGATTCATTAGACAAAGATCAGATGTTGGCAACTTTGCAAACAGAGCAACAGTCAGATTGGGAGTTGGCAACTGAGTACTTCGGGAATTTCACTGTAGTTTCTGCCTTTTTTATGGTCATTTATATCCTGGTGCACATTCTACTCTCTGTTCGTAGTGAACAACAAGGCTTGGAATTCAGTGGTCTTGATTTACCTGACAGTTTTGGGGAGCTTATCACTTGTGGAATTCTAGTCATTCAATTGGAGCGTGTTTATGCCATGATATTACATTTTGTGCAAGCTAGATTCCAAAGAGGAAGTGATCATGGTGTCAAAGCCCAAGGTGATGGATGGGTGCTTACTGTTGCATTGATCGAGGGGATTAATTTAGCTTCCTTGGATTCAACTGGGTTATCAGATCCCTATGTGGTTTTCACCTGCAATGGTAAAACAAGAACAAGCTCTGTCAAGCTTCAAACTCATGATCCTCAGTGGAATGAGATACTTGAGTTTGATGCTATGGAAGAGCCTCCTGCAGTGCTCGATGTGGAAGTTTTTGATTTTGATGGCCCATTTGATGAGGCAGCCTCACTTGGACATGCTGAAATCAATTTCCTAAGACATACTTCTACAGAACTGGCAGACATGTGGGTCTCCCTTGAAGGAAAGCTTGCTCAGTCATCACAGTCAAAGTTACACTTGAGAATTTTTTTGGACAATAACAATGGAGTTGAAACAATTAAAGAGTATTTAGCAAAGATGGAGAAGGAAGTTGGAAAGAAGATAACCCTCCAGTCACCTCACAGGAATTCAACATTTCTGGCACTGTTTGGATTGCCACCAGAAGAATTTCTTATCAATGACTTCACATGCTACCTGAAGCGAAAAGTGCCTTTGCAGGGTCGACTCTTTCTGTCTGCAAGAATTGTTGGGTTTTATGCCAACTTGTTTGGACACAAAACCAAATTTTTCTTTCTTTGGGAGGATATTGAAGATATTCAAGTTCATCCCCCATCCCTAGCATCTTTGGGTAGCCCTTCGCTGGTGATAATTCTGCGGAAAGGTCGAGGTCTTGATGCTAGGCATGGTGCAAAGTCTCAAGATGAAGAAGGAAGGCTGAAATTCTATTTTCAATCATTTGTGTCGTTCAATGTAGCCAGCAGGACGATTATGGCCTTGTGGAGAACAAGAACATTGACCCCAGAGCAGAAAGCACAAATTGCAGACGAGCAGCAGGATGAAGATGGGAGTTCTCTTCTTCTTGAAGACCCTGGATCTGTTTTCAATGTTGAAGAGGCAAAGATGTCCAAAGTTTACTCTGCGGAACTCCCTATTGATATAAAATCACTGATGGAAATGTTTGATGGAGGAAACTTGGAGCACAAAATTATGGAAAAGTCAGGCTATCTAAATTACAAGGCTACTGGTTGGGAAACTGTAAAGCCTGACCTATATGAACGACATCTCTGTTTCAAATTCAACCGCCATGTCTCAATCTTTGGAGGGGAAGTTACCTGCACACAGAAAAAATCTCCTATTGGAAATGACAATGGTTGGATTCTGAATGAGGTTATGGCTCTACACGATATCCCATTTGGTGACCATTTCCGGGTACATTTTAGGTACCAGATTGAGAACTTTGGCCTTGCTCCTGGTAAATGTAAATGCGAGGTCCACATGGAGATACTGTGGCTGAAAAGCACGGTTTTCCAGCAGAGAATCACTAGAAACATAACCGAAAAGTTCACGAGTAGATTGAAGGAAATAATTGAACTGGTTGAGAGAGAGGCTCTACTGAATTGCCCACAAGATAAATTTTGTAGAATTCTCTACACAATTTTTGGTACCATAGCTTCATTATGGAAATGTGTAAATATTTCTTTGAATTTCTATGAGCTTCTTGTCCCTATTTCAAGTCCGACCAAGGTGCTACAATAA 3183 42.6 MRLYAYVLEGRDLCVEDSYVKLQLGKFKSKTRVLRRSRNPVWNEEFAFRVHDVGGELILSVLHHDDDSGFFNSSNELVGRVRIPVSAVLAKENQTLPPTWFSLERGRSGKFISKEYAGKILLTISLHGRSQDTTADHPLYAHSRVKTRDFKEWEGLVESEDIVSSNTSTWKVPEGKQLMKAIASRLEKLLGKNEETSKMDDSSEVSSIPSDYEDCIEEQRPSCCSFEEAIELMQSRNGEQEMPENLQGGILLDQTYIVASKVLNMLLFAPNSQFRQDLAELQRTTNMKEGPWTWKSGALSCLTRVVSYTQAATKLVKAVDALEEQTYIKADGREFAVLVNVDTPDVPYGNSFKVELLYKIMPGPELSSGEESSHLVVSWGLSFSQNTIMRGMIEGGARQGLKESFDQFANLLAQNFKTLGSIDSLDKDQMLATLQTEQQSDWELATEYFGNFTVVSAFFMVIYILVHILLSVRSEQQGLEFSGLDLPDSFGELITCGILVIQLERVYAMILHFVQARFQRGSDHGVKAQGDGWVLTVALIEGINLASLDSTGLSDPYVVFTCNGKTRTSSVKLQTHDPQWNEILEFDAMEEPPAVLDVEVFDFDGPFDEAASLGHAEINFLRHTSTELADMWVSLEGKLAQSSQSKLHLRIFLDNNNGVETIKEYLAKMEKEVGKKITLQSPHRNSTFLALFGLPPEEFLINDFTCYLKRKVPLQGRLFLSARIVGFYANLFGHKTKFFFLWEDIEDIQVHPPSLASLGSPSLVIILRKGRGLDARHGAKSQDEEGRLKFYFQSFVSFNVASRTIMALWRTRTLTPEQKAQIADEQQDEDGSSLLLEDPGSVFNVEEAKMSKVYSAELPIDIKSLMEMFDGGNLEHKIMEKSGYLNYKATGWETVKPDLYERHLCFKFNRHVSIFGGEVTCTQKKSPIGNDNGWILNEVMALHDIPFGDHFRVHFRYQIENFGLAPGKCKCEVHMEILWLKSTVFQQRITRNITEKFTSRLKEIIELVEREALLNCPQDKFCRILYTIFGTIASLWKCVNISLNFYELLVPISSPTKVLQ* 1061
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 10796673 10803874 + Vvi17g818 Vvi17g818 779515

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g818 1060 SMART C2_3c 2 97 IPR000008 -
Vvi17g818 1060 SMART C2_3c 534 633 IPR000008 -
Vvi17g818 1060 PANTHER C2 AND GRAM DOMAIN-CONTAINING PROTEIN 1 1017 - -
Vvi17g818 1060 Gene3D - 684 811 IPR011993 -
Vvi17g818 1060 ProSiteProfiles C2 domain profile. 520 633 IPR000008 -
Vvi17g818 1060 Pfam VAD1 Analog of StAR-related lipid transfer domain 251 400 IPR031968 -
Vvi17g818 1060 Pfam VAD1 Analog of StAR-related lipid transfer domain 853 994 IPR031968 -
Vvi17g818 1060 Pfam C2 domain 534 635 IPR000008 -
Vvi17g818 1060 Pfam C2 domain 3 102 IPR000008 -
Vvi17g818 1060 Gene3D C2 domain 517 653 IPR035892 -
Vvi17g818 1060 CDD C2 535 635 - -
Vvi17g818 1060 SMART gram2001c 686 752 IPR004182 -
Vvi17g818 1060 ProSiteProfiles VASt domain profile. 849 1012 IPR031968 -
Vvi17g818 1060 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 533 658 IPR035892 -
Vvi17g818 1060 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2 128 IPR035892 -
Vvi17g818 1060 Gene3D C2 domain 1 151 IPR035892 -
Vvi17g818 1060 ProSiteProfiles C2 domain profile. 1 101 IPR000008 -
Vvi17g818 1060 PANTHER BNAA05G37250D PROTEIN 1 1017 IPR044511 -
Vvi17g818 1060 Pfam GRAM domain 690 760 IPR004182 -
Vvi17g818 1060 ProSiteProfiles VASt domain profile. 247 420 IPR031968 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g818 - - - vvi:100262229 2017.66
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g818 . . . . . . . . . Cmo18g00151 . . . . . . . . . . . . . . . . . . . . . Cone2ag0931 . . . Lsi02g00412 Csa01g00881 Chy12g01241 Cme12g01664 . . . . . . . . . . . . Cma18g00190 . Car18g00182 Cpe09g01005 . Bhi08g01658 Tan05g1972 . . . . . Cla01g01329 Cam01g1399 Cec01g1431 Cco01g1492 Clacu01g1396 Cmu01g1304 Cre01g1237 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012076 0 3 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 4 1 30