Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g819 ATGCAACACGACGAAGTGATATGGCAGGTCATCAGGCACAACCACTGCAGTTTCATGACCAAAATCACAACTGGGAACTTTTGCCGCAATCCCTATAACGTAACTGGGATTTGCAATCGCAGTTCCTGCCCTCTGGCCAATAGTCGCTACGCCACAATTCGAGACCATGATGGAGTGTTTTATCTATACATGAAAACCATTGAAAGAGCCCATATGCCAAACAAATTATGGGAACGGGTTAAATTGCCACGAAACTACGGAAAGGCTCTTGAGCTTATTGACAAGCATCTAATGTTTTGGCCGAAGTTGCTTGTTCACAAAACAAAGCAGCGTCTCACTAAAATGACTCAGATGCGAATTCGCATGAGGAAGCTTGCATTGAAAACAAGGGAGAAGATAATGACCACACCTAGGAAAGAGAAGAAGAGAGAGGCTAGAAGAGAGGAAAAGGCCGAAAAAGCTGCGGTTTTGGACAAGAGCATTGAGAAAGAATTGCTGGAACGTCTTAAGCGTGGAGTTTATGGTGACATATACAACTATCCTGTTAAAGAATATAATAAAGTTCTTGATATGGAAGGACTACAAGCTGCTAGTGAAGATGAAGAAGAGGAGGAGCCTGAAATTGAATATGTTGAAGGCTATGAAGAACTTGAAGAAGAAGATGATATTGAAGATTTTGGTGGCCTTGAGATTGATGAGTCTCTCAAGGATGAAGATCTCGATGATGATGAGATGGATTTAATTGACCGAAAGAGAGTGAGAAGAGGATCTGGGTCAGCTCATGGAAAGCTTGACAAAGATGAACGAGGCGCAAATTTGAAAAAGAGACCAAGGGTACTTGTTGAGGTTGAACATGAAGGCACTGATGAAAGACAGAAGGCAATCCAATGA 891 42.2 MQHDEVIWQVIRHNHCSFMTKITTGNFCRNPYNVTGICNRSSCPLANSRYATIRDHDGVFYLYMKTIERAHMPNKLWERVKLPRNYGKALELIDKHLMFWPKLLVHKTKQRLTKMTQMRIRMRKLALKTREKIMTTPRKEKKREARREEKAEKAAVLDKSIEKELLERLKRGVYGDIYNYPVKEYNKVLDMEGLQAASEDEEEEEPEIEYVEGYEELEEEDDIEDFGGLEIDESLKDEDLDDDEMDLIDRKRVRRGSGSAHGKLDKDERGANLKKRPRVLVEVEHEGTDERQKAIQ* 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 10807097 10814954 + Vvi17g819 Vvi17g819 779516

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g819 296 PANTHER PROTEIN MAK16 HOMOLOG 1 293 - -
Vvi17g819 296 PANTHER MAINTENANCE OF KILLER 16 MAK16 PROTEIN-RELATED 1 293 - -
Vvi17g819 296 PIRSF MAK16 1 296 IPR006958 -
Vvi17g819 296 Pfam Mak16 protein C-terminal region 138 225 IPR006958 -
Vvi17g819 296 MobiDBLite consensus disorder prediction 215 296 - -
Vvi17g819 296 Gene3D - 3 129 - -
Vvi17g819 296 MobiDBLite consensus disorder prediction 215 244 - -
Vvi17g819 296 MobiDBLite consensus disorder prediction 245 296 - -
Vvi17g819 296 Pfam Ribosomal L28e protein family 6 118 IPR029004 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g819 K14831 MAK16; protein MAK16 - vvi:100267396 500.745
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g819 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004620 1 2 0 3 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 2 2 2 41