Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g820 ATGACTCTTGCTATCTCCGACGTCGCCCAAACCCGATCTGTCCTCCAAACCCTCGGTGAACGACCCGATCACGAGGCAGTCGACAAAGCCAAGGCCAAAATCGCGGAGAAGGAGCAGGAATGCCGGCAGGCGGCGGAGAAGGAGAAGCAGATTTACAAGGCTGTGGTGCAGCTGGATGAGATGCACGAGGCATACGAGAAGTTGTTGAAGGAGGCAGAGGAGAGGCTGGTCAAGCTTTACGAGTCAGCATCGGCTTTTGCCGATGACGTGGAGCATTTGCCCGTGAAGGAGGAGACGAATGAGGAGGTTGTTGGGGTCTTGCAAGAGGCGTCTGGAAAAGGGTTAGAGAGAGTGGATCTATCTGGTCGGCGGTTGCGGTTTTTGCCAGAAGCGTTTGGGAAGATTCGTAGCTTGGTTGCGCTCAATCTCTCTTGCAATCAACTTGAGTTCATTCCTGATTCGATAGCCACACTAGAAAATCTCGAGGAGCTTAATCTTTCTTCAAATCTTTTAGAGTTGCTTCCGGACTCTATTGGGTTGTTGGTTAATTTGAAGATCTTGGATGCCTCTGGGAACAAGCTGCTTGCCTTACCTGATAGCATTTGTCATTGCAGGTCATTGGTCGAGCTGGATGTGAGCTTCAACAACCTGGCATATTTGCCAACTAATATTGGGTATGAATTAGTGAATTTAAAGAGGCTTTCAATCAATCTGAACAAGATCCGTTCCCTTCCCACTTCCATTGGTGAAATGAGGTCTTTGTGCCATCTTGATGCCCACTTCAATGAGCTCCGTGGCCTTCCATCTGCGATAGGGAGATTGACTAATCTCGAGACCCTCAATCTGAGTAGTAATTTCAGTGACCTCACAGAACTTCCTGAAACAATTGGTGATTTAACAAACCTGAGGGAACTTGATCTCAGCAACAACCAAATCCAAGCTCTTCCTGATACTTTTGGCCGGCTTGACAATCTGAACAAGCTCAACTTGGACCAAAACCCTCTTGTTATTCCCCCTATGGAGGTTGTGAATGAAGGAGTTGAAGCTGTTAAGGTTTTCATGGCCAAGAGGTGGCTTGATATTCTTGTGGAGGAAGAACAGAAGAGCTTGCTTGAGGTGAAAGAACAAACAGAGACTGGTTGGTTGACACGCAGCACCTCCTGGTTGGGTAGTGTTGTTTCAGGTGTAAGCCAGAGTGTTTCAGGGTATTTAGGACCTGGTCCCAGAGACCCTTACCTTGATCAGCAATTATGA 1254 47.77 MTLAISDVAQTRSVLQTLGERPDHEAVDKAKAKIAEKEQECRQAAEKEKQIYKAVVQLDEMHEAYEKLLKEAEERLVKLYESASAFADDVEHLPVKEETNEEVVGVLQEASGKGLERVDLSGRRLRFLPEAFGKIRSLVALNLSCNQLEFIPDSIATLENLEELNLSSNLLELLPDSIGLLVNLKILDASGNKLLALPDSICHCRSLVELDVSFNNLAYLPTNIGYELVNLKRLSINLNKIRSLPTSIGEMRSLCHLDAHFNELRGLPSAIGRLTNLETLNLSSNFSDLTELPETIGDLTNLRELDLSNNQIQALPDTFGRLDNLNKLNLDQNPLVIPPMEVVNEGVEAVKVFMAKRWLDILVEEEQKSLLEVKEQTETGWLTRSTSWLGSVVSGVSQSVSGYLGPGPRDPYLDQQL* 418
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 10820977 10825022 + Vvi17g820 Vvi17g820 779517

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g820 417 SMART LRR_bac_2 158 177 - -
Vvi17g820 417 SMART LRR_bac_2 181 200 - -
Vvi17g820 417 SMART LRR_bac_2 274 295 - -
Vvi17g820 417 SMART LRR_bac_2 299 318 - -
Vvi17g820 417 SMART LRR_bac_2 204 223 - -
Vvi17g820 417 SMART LRR_bac_2 228 247 - -
Vvi17g820 417 SMART LRR_bac_2 137 154 - -
Vvi17g820 417 Gene3D Ribonuclease Inhibitor 217 344 IPR032675 -
Vvi17g820 417 SUPERFAMILY L domain-like 113 336 - -
Vvi17g820 417 ProSiteProfiles Leucine-rich repeat profile. 137 158 IPR001611 GO:0005515
Vvi17g820 417 Coils Coil 55 82 - -
Vvi17g820 417 PRINTS Leucine-rich repeat signature 299 312 - -
Vvi17g820 417 PRINTS Leucine-rich repeat signature 207 220 - -
Vvi17g820 417 ProSiteProfiles Leucine-rich repeat profile. 160 181 IPR001611 GO:0005515
Vvi17g820 417 PANTHER PLANT INTRACELLULAR RAS-GROUP-RELATED LRR PROTEIN 3 6 408 - -
Vvi17g820 417 Gene3D Ribonuclease Inhibitor 23 216 IPR032675 -
Vvi17g820 417 Coils Coil 27 47 - -
Vvi17g820 417 SMART LRR_typ_2 205 227 IPR003591 -
Vvi17g820 417 SMART LRR_typ_2 228 251 IPR003591 -
Vvi17g820 417 SMART LRR_typ_2 274 298 IPR003591 -
Vvi17g820 417 SMART LRR_typ_2 158 180 IPR003591 -
Vvi17g820 417 SMART LRR_typ_2 135 157 IPR003591 -
Vvi17g820 417 SMART LRR_typ_2 299 322 IPR003591 -
Vvi17g820 417 SMART LRR_typ_2 181 204 IPR003591 -
Vvi17g820 417 Pfam Leucine rich repeat 275 335 IPR001611 GO:0005515
Vvi17g820 417 Pfam Leucine rich repeat 136 194 IPR001611 GO:0005515
Vvi17g820 417 Pfam Leucine rich repeat 205 264 IPR001611 GO:0005515
Vvi17g820 417 ProSiteProfiles Leucine-rich repeat profile. 301 322 IPR001611 GO:0005515
Vvi17g820 417 PANTHER LEUCINE-RICH REPEAT-CONTAINING 6 408 - -
Vvi17g820 417 SMART LRR_sd22_2 181 212 - -
Vvi17g820 417 SMART LRR_sd22_2 299 327 - -
Vvi17g820 417 SMART LRR_sd22_2 228 259 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g820 - - - vvi:100265719 725.702
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g820 . . Bda06g00618 Bda15g00540 . . . Bma12g01054 . . Cma10g00093 Cma11g00070 Car10g00082 Car11g00062 Sed08g0451 . Cpe04g01581 Bhi02g00603 Tan09g2304 Cmetu05g0163 . . . . Cla06g01699 Cam06g1886 Cec06g1935 Cco06g1939 Clacu06g1842 Cmu06g1784 . . . Cone13ag0167 Cone19ag0164 . . . . Blo13g00144 Blo15g00251 . . Bpe07g00858 . . Bma08g00083 . Cmo10g00097 Cmo11g00072 . . . . . Cpe18g00869 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006865 2 1 2 2 1 1 2 1 1 1 1 1 2 1 1 2 0 2 2 0 1 1 1 1 1 1 1 2 1 1 37