Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g826 ATGGAGTCTACAAAAGTCATCAAGGTTAAATATGGGAACACACTAAGGCGTTTTAATGCATGCCTTGACGAAAATGGAGAACTGGATCTTGATATCAATGGATTAAGAGCAAAAGTCATCACTCTCTTTAATCTTGTGCCTGATGCTGATCTTACACTGACGTATATTGATGAAGATGGTGACGTGGTAACACTTGTTGATGATGAAGATCTGCATGATGTGATGAGACAGCGCTTGAAGTTCTTGAGGATTACCGTGCTGCTAAATATTGAAAAGGATGATGGCAATGCTGGTGTTGCTCCCATGAGACCACCTTTTGACCTGCGCCCATTTCAAGATGGCAATGCTGGTGTTGCTGAATTTATTAAATCAGTACCAGAGCCACTACTTGAAGCATTTTCGAAACTATCAACAGATTTTACTTCTAAAGCTGCATCCTCTGCTCCAGTGCTTTCTGAGGTTCTTACCTGCCTCTCAAAGATGGGAGAATCCTACCTCAATTCTGTTTCTCCATCTGAGGTTGGTGCAGATTCAAGCACACATAATAGGTCATCTGACAACTCCGTCGATCCTTTAGTGACTGAAAATACAAAAGCTCCGCAAGCTGACAGCAAACAAGAACTGCTGCCAACTGCTGAACTCAAAGATTCAAATTCTAAACTTAATGAAGTGGGAACAACTGGACCCGTGTCTAGAGGTATCGCATCAAATGTTCCTGCTACTGACAACAAGGAGGCTAATGTGGAAAGCAATGTTGCACCAGTTGCATCCAATGATCCCTCTGTGGACAAGAGGAAGGAGACTAAAAAGGAAAGCAAGTATGCACCCATTGCATGTTCTGATTGTGCCAATGATCCCTCTGTGGACAAGAGGAAGGAGACTAAGAAGGAAAGCAAGTATCCACCCGTTGCATGTTCTGATTGTGCTTCTGATGGAAGGAAAGGAACTAAGAAGGGAAGCGTTGATCATTATGGTGAGAAGTTGGCTGATTGTGTTGCATCCACGTGGAATGCAGGATATCCCAGACCCTATAATCCAGATCCTTCCCATATCACTTGTTTGGATAGTGGGATAAGCAAGAAAATTTCTAGTGATGGTAGGAACTATGCGGCTCCAAATTTTGGTAACCCTTTTAGTGACTGCCCATTTACTGGAATGCCTCCAGTAAATAACTCACTTTTGTCTACTGGTGCTCGTCCTCGTCCTCCTCTATTCAAGAGGAGCTACAAAGATGCTATGGGTGGTACCTTCCATAAAGGTATTCAATGTGATGGTTGTGGGGTTCATCCAATAACTGGACCTCGGTTCAAGTCGAAAGTAAAAGAAGATTATGACCTTTGCAGCATCTGCTTCTCTGATATGGGTAATGAGGCTGATTACATTAGAATAGACTGGCCTGCTCGTCAGCATCCATGGTCTTTCAAGATGTCACATGATCCTATGCAACAACCTGAGGTTCATTCCCCAGCACAACCCTATCCCAGTATAGGTTGTGGAATAAGGGTACGTCAGCCGCATCTTGATAGCCGCTTTATTTTGGATGTAAATGTCATAGATGGTACAGTGATGGCCCCATCAATCCCATTCACAAAGACTTGGAGGATGCGCAACACTGGTAATGCTGTGTGGGCTCGAGGAACACGACTTGTATGGATTGGGGGAGATAGATTCAGTGAAAAAGATTCGGTTGAGATTTGTAGGGATTGTGTGCCAATTGGTGAAGAACTTGAAATTTCAGTTGATTTTACTGCACCTGAATTTCCTGGTCGATACATCTCATACTGGAGGATGGCTGCACCATCTGGCCAAACATTTGGGCAACGAGTTTGGGTTCTCATTCAGGTTGACAGTTCCCTGAAGGACCTGTTAGGTGATAGCATGCCTGTCATAAACCTGAATTTTCCTCCTAGTAGTGGTGGGTCTAAAAGCCCTCAGATTATAGATGTGAATGTTGAGCCCGTGGTGGATGGAGGCCTTGTTGAGGTCAATGAACCAGTGAAGCCGATTGTTAAAGAACATGCTAACAAGAACCAGGAACTGAATTTCCCTATTGATGATAACTTGCTAGCCACCAATGTTGTTCCTGGACCTGTTTCACCGGAGAATAATTCATCTGTATCATATCCTATTATAGATTTTTCTGATGCTGCCCCAATTTCTGGAGTTGATAAGGCCGCCTTGGATCAGGCTGCCTTGGAAGAAGTGATGGGTAAAAACGATGGTGTTGAGCAGTCTCTCCTCAAAGCTCTTGATGAGATGGGTTTCAAGTGTGATGCATTTAACAAGGAAATCTTGAGGATGCATGAATATGATTTGGAGGAGACTGTGAACCATCTTTGTGGTGTTGGGGAATGGGATCCTATCCTAGAGGAGTTGAAGGAGATGGGTTTCAATGACACAGAACTGAACAAGAAGCTGTTGAGGAAGAACAATGGCAGTCTCAAGCGCGTGGTCATGGATCTTATTGCTGTAGAGAAATATTAG 2484 43.68 MESTKVIKVKYGNTLRRFNACLDENGELDLDINGLRAKVITLFNLVPDADLTLTYIDEDGDVVTLVDDEDLHDVMRQRLKFLRITVLLNIEKDDGNAGVAPMRPPFDLRPFQDGNAGVAEFIKSVPEPLLEAFSKLSTDFTSKAASSAPVLSEVLTCLSKMGESYLNSVSPSEVGADSSTHNRSSDNSVDPLVTENTKAPQADSKQELLPTAELKDSNSKLNEVGTTGPVSRGIASNVPATDNKEANVESNVAPVASNDPSVDKRKETKKESKYAPIACSDCANDPSVDKRKETKKESKYPPVACSDCASDGRKGTKKGSVDHYGEKLADCVASTWNAGYPRPYNPDPSHITCLDSGISKKISSDGRNYAAPNFGNPFSDCPFTGMPPVNNSLLSTGARPRPPLFKRSYKDAMGGTFHKGIQCDGCGVHPITGPRFKSKVKEDYDLCSICFSDMGNEADYIRIDWPARQHPWSFKMSHDPMQQPEVHSPAQPYPSIGCGIRVRQPHLDSRFILDVNVIDGTVMAPSIPFTKTWRMRNTGNAVWARGTRLVWIGGDRFSEKDSVEICRDCVPIGEELEISVDFTAPEFPGRYISYWRMAAPSGQTFGQRVWVLIQVDSSLKDLLGDSMPVINLNFPPSSGGSKSPQIIDVNVEPVVDGGLVEVNEPVKPIVKEHANKNQELNFPIDDNLLATNVVPGPVSPENNSSVSYPIIDFSDAAPISGVDKAALDQAALEEVMGKNDGVEQSLLKALDEMGFKCDAFNKEILRMHEYDLEETVNHLCGVGEWDPILEELKEMGFNDTELNKKLLRKNNGSLKRVVMDLIAVEKY* 828
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 10869021 10874179 + Vvi17g826 Vvi17g826 779523

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g826 827 MobiDBLite consensus disorder prediction 168 270 - -
Vvi17g826 827 SMART PB1_new 4 89 IPR000270 GO:0005515
Vvi17g826 827 PANTHER PROTEIN JOKA2 1 825 - -
Vvi17g826 827 Gene3D - 412 483 IPR043145 -
Vvi17g826 827 MobiDBLite consensus disorder prediction 211 257 - -
Vvi17g826 827 SMART zz_5 417 462 IPR000433 GO:0008270
Vvi17g826 827 Pfam Zinc finger, ZZ type 418 453 IPR000433 GO:0008270
Vvi17g826 827 PANTHER OVARIAN CARCINOMA ANTIGEN CA125-RELATED 1 825 - -
Vvi17g826 827 ProSiteProfiles PB1 domain profile. 4 89 IPR000270 GO:0005515
Vvi17g826 827 MobiDBLite consensus disorder prediction 285 300 - -
Vvi17g826 827 ProSiteProfiles Zinc finger ZZ-type profile. 418 468 IPR000433 GO:0008270
Vvi17g826 827 CDD UBA_NBR1 742 780 - -
Vvi17g826 827 SUPERFAMILY RING/U-box 415 467 - -
Vvi17g826 827 Gene3D Immunoglobulins 501 619 IPR013783 -
Vvi17g826 827 SUPERFAMILY UBA-like 785 823 IPR009060 GO:0005515
Vvi17g826 827 Gene3D - 737 783 - -
Vvi17g826 827 Gene3D - 2 88 - -
Vvi17g826 827 CDD NBR1_like 505 616 IPR032350 -
Vvi17g826 827 SUPERFAMILY CAD & PB1 domains 6 86 - -
Vvi17g826 827 MobiDBLite consensus disorder prediction 168 204 - -
Vvi17g826 827 Gene3D - 784 826 - -
Vvi17g826 827 CDD UBA_NBR1 784 822 - -
Vvi17g826 827 Pfam PB1 domain 6 85 IPR000270 GO:0005515
Vvi17g826 827 Pfam Ig-like domain from next to BRCA1 gene 516 615 IPR032350 -
Vvi17g826 827 CDD PB1_Joka2 6 89 - -
Vvi17g826 827 MobiDBLite consensus disorder prediction 285 321 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g826 K17987 NBR1; next to BRCA1 gene 1 protein - vvi:100253588 1639.01
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g826 Blo04g00719 . . . . . . . Cmo13g00893 Cmo18g00152 . . . . . Cpe20g00262 . . . . . . . . . . . . . . . . . Cone13ag0168 Cone19ag0165 . Csa01g00883 Chy12g01240 Cme12g01663 . . . Bda14g00797 . Bpe15g00653 Bma03g00769 . Sed01g1623 . . Cma13g00862 Cma18g00191 Car13g00705 Car18g00183 Cpe09g01004 . Bhi08g01660 Tan05g1970 Cmetu12g0808 . . . . Cla03g00287 Cam03g0304 Cec03g0298 Cco03g0313 Clacu03g0305 Cmu03g0915 Cre03g0607 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004955 1 2 1 1 1 2 2 2 2 1 2 2 2 1 1 2 2 2 2 2 1 1 0 1 1 0 1 1 1 1 41