Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g827 ATGGAATCTGGAAATAGGTTCTACTCTGTTGATGAGTTTCACTTAGACCCCAAATGGCTGATTGATCCAAAGCATCTTTTTGTTGGGCCAAGAATTGGAGAAGGCGCTCATGCCAAAGTATATGAAGGAAAATATAAAAATCAGAATGTCGCCATCAAAATTGTTCATAGAGGAGAAACTCCAGAGGAGATCACCAAGAGAGAAGCACGATTCGCAAGAGAGGTCTCAATGCTTTCAAGAGTTCAGCATAAAAACCTGGCAAAGTTTATTGGTGTCTGCAAGGAGCCTGTAATGGTGATAGTCACCGAGCTTTTATTGGGAGGGACGTTGCGTAAATATTTGCTAAACATGCGACCAAGATGCTTGGATGCTCGAATTGCAGTTGGTTTTGCTCTTGATATTGCTCGAGCAATGGAATGCCTGCACTCTCATGGGATCATACATCGTGATCTGAAACCTGAGAACTTAATCTTGACTGCAGACCACAAAACAGTTAAACTGGTGGATTTTGGTTTAGCAAGGGAAGAGTCACTGACAGAGATGATGACTGCTGAAACAGGGACTTACCGTTGGATGGCTCCAGAGTTGTACAGTACTGTGACATTAAGGCATGGAGAGAAGAAGCACTACAACAACAAAGTGGATGCTTATAGCTTTGCCATTGTCTTGTGGGAGCTTTTACATAACAAGTTGCCGTTTGAAGGCATGTCTAATTTACAGGCAGCATATGCAGCTGCTTTTAAGAATGTGAGGCCCAGTGCTGAAAACCTCCCAGAGGAGTTGGCTATAATACTAACTTCATGTTGGAAGGAGGATCCTAACGCCAGACCGAACTTCAGCCAGATAGTCCAGATGCTCCTCCATTATCTTTCTACCATTTCACCTCCAGAACCTGCAATCCCTTCTCGGGTTTTCGCATCAGAAAACACCATCTTGCCACCTGAATCTCCAGGCACAAGCTCTTTGATGGCAGTACGTGATGACTCAGGGGAAACCCCCAAAGTGAAGATGGAGAACAAACCAAAAGGCTTCTTCTTTTGCTTTAACCAGTGCTATTAA 1059 43.81 MESGNRFYSVDEFHLDPKWLIDPKHLFVGPRIGEGAHAKVYEGKYKNQNVAIKIVHRGETPEEITKREARFAREVSMLSRVQHKNLAKFIGVCKEPVMVIVTELLLGGTLRKYLLNMRPRCLDARIAVGFALDIARAMECLHSHGIIHRDLKPENLILTADHKTVKLVDFGLAREESLTEMMTAETGTYRWMAPELYSTVTLRHGEKKHYNNKVDAYSFAIVLWELLHNKLPFEGMSNLQAAYAAAFKNVRPSAENLPEELAIILTSCWKEDPNARPNFSQIVQMLLHYLSTISPPEPAIPSRVFASENTILPPESPGTSSLMAVRDDSGETPKVKMENKPKGFFFCFNQCY* 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 10874998 10877438 + Vvi17g827 Vvi17g827 779524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g827 352 PANTHER PROTEIN KINASE ATN1 1 329 - -
Vvi17g827 352 SMART serkin_6 26 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g827 352 CDD STKc_MAP3K-like 32 286 - -
Vvi17g827 352 PRINTS Tyrosine kinase catalytic domain signature 102 115 IPR001245 GO:0004672|GO:0006468
Vvi17g827 352 PRINTS Tyrosine kinase catalytic domain signature 140 158 IPR001245 GO:0004672|GO:0006468
Vvi17g827 352 PRINTS Tyrosine kinase catalytic domain signature 214 236 IPR001245 GO:0004672|GO:0006468
Vvi17g827 352 PRINTS Tyrosine kinase catalytic domain signature 257 279 IPR001245 GO:0004672|GO:0006468
Vvi17g827 352 ProSitePatterns Serine/Threonine protein kinases active-site signature. 146 158 IPR008271 GO:0004672|GO:0006468
Vvi17g827 352 PIRSF TyrPK_CSF1-R 1 126 - -
Vvi17g827 352 PIRSF TyrPK_CSF1-R 114 329 - -
Vvi17g827 352 Gene3D Phosphorylase Kinase; domain 1 14 105 - -
Vvi17g827 352 ProSitePatterns Protein kinases ATP-binding region signature. 32 53 IPR017441 GO:0005524
Vvi17g827 352 Gene3D Transferase(Phosphotransferase) domain 1 107 297 - -
Vvi17g827 352 PANTHER SERINE-THREONINE PROTEIN KINASE 1 329 - -
Vvi17g827 352 SUPERFAMILY Protein kinase-like (PK-like) 17 313 IPR011009 -
Vvi17g827 352 Pfam Protein tyrosine and serine/threonine kinase 30 286 IPR001245 GO:0004672|GO:0006468
Vvi17g827 352 ProSiteProfiles Protein kinase domain profile. 26 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi14g1287 Vvi17g827 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76333 PF07714 PK_Tyr_Ser-Thr 5.40E-56 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g827 - - vvi:100243394 714.146