Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g834 ATGTGTTCCAAATTTTCATCCCCTCAGCTTGTTCTCTGGCTTGAATCACATGCACAAACAGGAACAACTCATGTGACTGTCTCCCTCAAATCCATGTTTCTAGGCTGGCCTCCTTCAATGGCAATTTCAGCAACTTCAGCTTCTGCTTCCACAAAGCTCATATACCCATCTCCTCCTCCTTCTTCTCCTTCTTCCTCAACCACTCTCGCTCTCTGCACCCCTTCTCCCCGTACCAGAAAACATCCCTCTAACCTCTCCTCCTCCTTTCTCAGTAAACCCTCCACCACCTTCCTTTTAACCCCCACCACCACTGCCACCACCACTCAGCGCCGTTCTTTCACTGTTCGAGCTGCCAGGGGAAAATTCGAGAGGAATAAGCCCCATCTCAACATTGGGACAATTGGCCATGTCGACCACGGCAAGACCACTCTCACTGCCGCTCTTACCATGGCCTTAGCGGCCATGGGCAACAGCGCCCCCAAGAAGTACGACGAAATCGATGCCGCCCCGGAAGAGCGCGCCCGTGGAATTACTATTAACACTGCCACCGTCGAGTACGAGACTGAGAACCGCCATTACGCCCACGTCGATTGCCCCGGTCATGCCGATTATGTCAAGAACATGATCACCGGGGCTGCCCAGATGGATGGCGCCATTCTCGTCGTCTCCGGCGCTGACGGGCCCATGCCCCAGACCAAGGAGCACATACTGTTGGCCAAGCAAGTGGGTGTCCCCAATATGGTTGTTTTCCTCAATAAACAAGACCAAGTTGATGACGAGGAGCTTCTGCAACTTGTTGAATTGGAAGTTCGTGAGCTTCTTTCTTCGTATGAGTTCCCAGGTGAAAACCAATGGGTCGATAAAATTTATGAGCTTATGGATTCTGTTGACAGTTATATACCAATTCCCCAACGCCAAACCGATCTCCCATTTCTTCTTGCCATTGAAGATGTTTTTTCAATCACGGGTCGTGGAACCGTGGCCACCGGCCGTGTCGAGAGGGGTACGATTAAGGTTGGAGAGACAGTGGACATTCTCATAATGCCAGTGGCTTGCGAGCAAGGGATGAGGTTTGCCATCAGAGAAGGGGGCAAGACTGTTGGAGCTGGTGTTATTCAGTCCATCATTGAGTGA 1134 51.41 MCSKFSSPQLVLWLESHAQTGTTHVTVSLKSMFLGWPPSMAISATSASASTKLIYPSPPPSSPSSSTTLALCTPSPRTRKHPSNLSSSFLSKPSTTFLLTPTTTATTTQRRSFTVRAARGKFERNKPHLNIGTIGHVDHGKTTLTAALTMALAAMGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGENQWVDKIYELMDSVDSYIPIPQRQTDLPFLLAIEDVFSITGRGTVATGRVERGTIKVGETVDILIMPVACEQGMRFAIREGGKTVGAGVIQSIIE* 378
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 10957676 10965768 - Vvi17g834 Vvi17g834 779531

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g834 377 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 333 377 IPR009001 -
Vvi17g834 377 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 126 304 IPR000795 GO:0003924|GO:0005525
Vvi17g834 377 CDD EF_Tu 127 303 IPR041709 -
Vvi17g834 377 PANTHER ELONGATION FACTOR TU-RELATED 281 345 - -
Vvi17g834 377 PANTHER ELONGATION FACTOR TU-RELATED 83 282 - -
Vvi17g834 377 PANTHER ELONGATION FACTOR TU-RELATED 346 377 - -
Vvi17g834 377 PANTHER ELONGATION FACTOR TU 281 345 - -
Vvi17g834 377 PANTHER ELONGATION FACTOR TU 83 282 - -
Vvi17g834 377 PANTHER ELONGATION FACTOR TU 346 377 - -
Vvi17g834 377 TIGRFAM small_GTP: small GTP-binding protein domain 130 262 IPR005225 GO:0005525
Vvi17g834 377 MobiDBLite consensus disorder prediction 64 88 - -
Vvi17g834 377 MobiDBLite consensus disorder prediction 52 88 - -
Vvi17g834 377 Gene3D - 117 303 IPR027417 -
Vvi17g834 377 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 125 326 IPR027417 -
Vvi17g834 377 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 167 182 IPR031157 -
Vvi17g834 377 Gene3D Translation factors 306 370 - -
Vvi17g834 377 Pfam Elongation factor Tu GTP binding domain 126 277 IPR000795 GO:0003924|GO:0005525
Vvi17g834 377 Pfam Elongation factor Tu C-terminal domain 346 375 IPR004160 -
Vvi17g834 377 PRINTS GTP-binding elongation factor signature 130 143 IPR000795 GO:0003924|GO:0005525
Vvi17g834 377 PRINTS GTP-binding elongation factor signature 174 182 IPR000795 GO:0003924|GO:0005525
Vvi17g834 377 PRINTS GTP-binding elongation factor signature 194 204 IPR000795 GO:0003924|GO:0005525
Vvi17g834 377 PRINTS GTP-binding elongation factor signature 210 221 IPR000795 GO:0003924|GO:0005525
Vvi17g834 377 PRINTS GTP-binding elongation factor signature 247 256 IPR000795 GO:0003924|GO:0005525
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g834 K02358 tuf, TUFM; elongation factor Tu - vvi:100244975 472.626
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g834 Blo04g00717 . . . . . Bma06g00224 . . . Cma10g00090 Cma11g00064 Car10g00079 Car11g00058 Sed08g0074 . Cpe04g01586 Bhi02g00598 Tan09g2310 Cmetu02g0003 . . . . Cla06g01704 Cam06g1892 Cec06g1941 Cco06g1945 Clacu06g1848 Cmu06g1789 Cre06g2604 Cone2ag0932 Cone16ag0071 . . . . . . . . . . . Bpe15g00654 Bma03g00766 . . Cmo10g00093 Cmo11g00067 . . . . . Cpe18g00872 . . . . . . . . . . . . . . Lsi06g01592 . . Cme02g02012
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0068809 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1