Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi17g835 | ATGCCCCAGGTTTTGTCCTCCGAGCAAGACCCTGATGATCCCGATACTGAATTCGTAGAGATTGATCCAACTGGGAGATATGGTCGGTATAAGGAGGTTCTAGGAAAAGGGGCTTTCAAGAAAGTATATAGAGCATTTGATGAATTGGAAGGAATTGAAGTAGCTTGGAATCAGGTTAAGGTGGCAGATCTATTACGGAACTCAGAAGAGTTCGAGCGTCTGTATTCAGAAGTTCATTTGCTCAAGACTCTGAAGCATAAGAACATAATTAAGTTTTATATTTCGTGGGTCGATACAAGGAATGAGAATATCAATTTTATTACAGAGATTTTCACCTCAGGCACATTGAGGCAGTATCGAAAGAAACATAAGCATGTTGATTTGAGGGCTCTGAAGAAATGGTCTAGGCAGATTCTGGAGGGTCTTCTCTATCTTCACAGTCATGACCCTCCTGTTATTCATCGGGACCTGAAGTGTGACAACATTTTTGTTAATGGAAACCAAGGAGAGGTGAAAATTGGGGACTTAGGACTGGCTGCCATTCTTCGCCAGGCTCGATCAGCTCATAGTGTCATTGGTACTCCTGAGTTCATGGCACCTGAGCTTTACGAGGAGGAATACAATGAGCTTGTAGACATTTATGCCTTTGGGATGTGCTTGCTGGAGTTGGTGACCTTTGAGTACCCATATGTTGAATGTGCCAATGCTGCTCAAATATACAAGAAAGTGACATCAGGAATCAAACCAGCATCATTAGCAAAAGTGAAAGACCCTAGAGTTAGAGCATTTATAGATAAATGTATTGCAAATGTCTCTGATCGGTTGTCTGCCAAGGAACTCTTGAGGGATCCTTTTCTCCAATCAGATGAGGAAAATGGAAGTGTAGGCCGTTCTTTACAACCCCATCCTCATCATTCAGGTAGTCATGACCACTTCAATACTGGTACAAGTTCTAAGGTCTCTCTGCCTGAGTCAAGTCGAGACTTCAAGGTGCAAGGTCAAAGGAGAGATGTCAACACAATATTTCTAAAATTACGAATTGCAGATTCTAAAGGTCATATTCGCAACATCCACTTCCCATTTGATATTGGGGCTGATACAGCAATTTCTGTTGCTGGTGAAATGGTTGAAGAGTTGGACTTGACAGATCAAGATGTTTCAACCATTGCTGCAATGATTGACTCAGAAATTCGGTCCATCATTTCAGATTGGCCCCCATCAAGAGAAGTTTTTGGGGATAATTTGAGCACAGAGGTTGCAATTTCTGATATCTGTCCCCCTGAAAGTGAGGGTGATGCTTTGCCCTTGATGAATGAGTCTGCTACTTCTTCTTGTGGCCTTGTCCTGGAACGGTTGCCTTCAGGTCGGAGGTACTGGTCCGACTCACCCAAGGCAGTTGGTGGAAACTCTCCTATTAGACCTGCCTTTTCAAACTTGTCTTCTCAGGTTGATTCGATAAGTTAA | 1464 | 42.83 | MPQVLSSEQDPDDPDTEFVEIDPTGRYGRYKEVLGKGAFKKVYRAFDELEGIEVAWNQVKVADLLRNSEEFERLYSEVHLLKTLKHKNIIKFYISWVDTRNENINFITEIFTSGTLRQYRKKHKHVDLRALKKWSRQILEGLLYLHSHDPPVIHRDLKCDNIFVNGNQGEVKIGDLGLAAILRQARSAHSVIGTPEFMAPELYEEEYNELVDIYAFGMCLLELVTFEYPYVECANAAQIYKKVTSGIKPASLAKVKDPRVRAFIDKCIANVSDRLSAKELLRDPFLQSDEENGSVGRSLQPHPHHSGSHDHFNTGTSSKVSLPESSRDFKVQGQRRDVNTIFLKLRIADSKGHIRNIHFPFDIGADTAISVAGEMVEELDLTDQDVSTIAAMIDSEIRSIISDWPPSREVFGDNLSTEVAISDICPPESEGDALPLMNESATSSCGLVLERLPSGRRYWSDSPKAVGGNSPIRPAFSNLSSQVDSIS* | 488 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
17 | 10966271 | 10980533 | - | Vvi17g835 | Vvi17g835 | 779532 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi17g835 | 487 | Pfam | Protein kinase domain | 31 | 286 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vvi17g835 | 487 | PANTHER | SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED | 7 | 482 | - | - | |
Vvi17g835 | 487 | Pfam | Oxidative-stress-responsive kinase 1 C-terminal domain | 343 | 397 | IPR024678 | GO:0004674|GO:0005524 | |
Vvi17g835 | 487 | ProSiteProfiles | Protein kinase domain profile. | 28 | 286 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vvi17g835 | 487 | SMART | serkin_6 | 28 | 286 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vvi17g835 | 487 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 152 | 164 | IPR008271 | GO:0004672|GO:0006468 | |
Vvi17g835 | 487 | Gene3D | Transferase(Phosphotransferase) domain 1 | 111 | 293 | - | - | |
Vvi17g835 | 487 | MobiDBLite | consensus disorder prediction | 291 | 329 | - | - | |
Vvi17g835 | 487 | MobiDBLite | consensus disorder prediction | 310 | 328 | - | - | |
Vvi17g835 | 487 | Gene3D | - | 339 | 419 | - | - | |
Vvi17g835 | 487 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Vvi17g835 | 487 | CDD | STKc_WNK | 26 | 286 | - | - | |
Vvi17g835 | 487 | Gene3D | Phosphorylase Kinase; domain 1 | 12 | 109 | - | - | |
Vvi17g835 | 487 | SUPERFAMILY | Protein kinase-like (PK-like) | 30 | 319 | IPR011009 | - | |
Vvi17g835 | 487 | MobiDBLite | consensus disorder prediction | 473 | 487 | - | - | |
Vvi17g835 | 487 | PANTHER | SERINE/THREONINE-PROTEIN KINASE-RELATED | 7 | 482 | - | - | |
Vvi17g835 | 487 | MobiDBLite | consensus disorder prediction | 462 | 487 | - | - |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
76334 | PF00069 | Pkinase | 9.80E-51 | CL0016 | Vvi | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi17g835 | K08867 | - | vvi:100250110 | 977.237 |