Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g835 ATGCCCCAGGTTTTGTCCTCCGAGCAAGACCCTGATGATCCCGATACTGAATTCGTAGAGATTGATCCAACTGGGAGATATGGTCGGTATAAGGAGGTTCTAGGAAAAGGGGCTTTCAAGAAAGTATATAGAGCATTTGATGAATTGGAAGGAATTGAAGTAGCTTGGAATCAGGTTAAGGTGGCAGATCTATTACGGAACTCAGAAGAGTTCGAGCGTCTGTATTCAGAAGTTCATTTGCTCAAGACTCTGAAGCATAAGAACATAATTAAGTTTTATATTTCGTGGGTCGATACAAGGAATGAGAATATCAATTTTATTACAGAGATTTTCACCTCAGGCACATTGAGGCAGTATCGAAAGAAACATAAGCATGTTGATTTGAGGGCTCTGAAGAAATGGTCTAGGCAGATTCTGGAGGGTCTTCTCTATCTTCACAGTCATGACCCTCCTGTTATTCATCGGGACCTGAAGTGTGACAACATTTTTGTTAATGGAAACCAAGGAGAGGTGAAAATTGGGGACTTAGGACTGGCTGCCATTCTTCGCCAGGCTCGATCAGCTCATAGTGTCATTGGTACTCCTGAGTTCATGGCACCTGAGCTTTACGAGGAGGAATACAATGAGCTTGTAGACATTTATGCCTTTGGGATGTGCTTGCTGGAGTTGGTGACCTTTGAGTACCCATATGTTGAATGTGCCAATGCTGCTCAAATATACAAGAAAGTGACATCAGGAATCAAACCAGCATCATTAGCAAAAGTGAAAGACCCTAGAGTTAGAGCATTTATAGATAAATGTATTGCAAATGTCTCTGATCGGTTGTCTGCCAAGGAACTCTTGAGGGATCCTTTTCTCCAATCAGATGAGGAAAATGGAAGTGTAGGCCGTTCTTTACAACCCCATCCTCATCATTCAGGTAGTCATGACCACTTCAATACTGGTACAAGTTCTAAGGTCTCTCTGCCTGAGTCAAGTCGAGACTTCAAGGTGCAAGGTCAAAGGAGAGATGTCAACACAATATTTCTAAAATTACGAATTGCAGATTCTAAAGGTCATATTCGCAACATCCACTTCCCATTTGATATTGGGGCTGATACAGCAATTTCTGTTGCTGGTGAAATGGTTGAAGAGTTGGACTTGACAGATCAAGATGTTTCAACCATTGCTGCAATGATTGACTCAGAAATTCGGTCCATCATTTCAGATTGGCCCCCATCAAGAGAAGTTTTTGGGGATAATTTGAGCACAGAGGTTGCAATTTCTGATATCTGTCCCCCTGAAAGTGAGGGTGATGCTTTGCCCTTGATGAATGAGTCTGCTACTTCTTCTTGTGGCCTTGTCCTGGAACGGTTGCCTTCAGGTCGGAGGTACTGGTCCGACTCACCCAAGGCAGTTGGTGGAAACTCTCCTATTAGACCTGCCTTTTCAAACTTGTCTTCTCAGGTTGATTCGATAAGTTAA 1464 42.83 MPQVLSSEQDPDDPDTEFVEIDPTGRYGRYKEVLGKGAFKKVYRAFDELEGIEVAWNQVKVADLLRNSEEFERLYSEVHLLKTLKHKNIIKFYISWVDTRNENINFITEIFTSGTLRQYRKKHKHVDLRALKKWSRQILEGLLYLHSHDPPVIHRDLKCDNIFVNGNQGEVKIGDLGLAAILRQARSAHSVIGTPEFMAPELYEEEYNELVDIYAFGMCLLELVTFEYPYVECANAAQIYKKVTSGIKPASLAKVKDPRVRAFIDKCIANVSDRLSAKELLRDPFLQSDEENGSVGRSLQPHPHHSGSHDHFNTGTSSKVSLPESSRDFKVQGQRRDVNTIFLKLRIADSKGHIRNIHFPFDIGADTAISVAGEMVEELDLTDQDVSTIAAMIDSEIRSIISDWPPSREVFGDNLSTEVAISDICPPESEGDALPLMNESATSSCGLVLERLPSGRRYWSDSPKAVGGNSPIRPAFSNLSSQVDSIS* 488
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 10966271 10980533 - Vvi17g835 Vvi17g835 779532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g835 487 Pfam Protein kinase domain 31 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g835 487 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 7 482 - -
Vvi17g835 487 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 343 397 IPR024678 GO:0004674|GO:0005524
Vvi17g835 487 ProSiteProfiles Protein kinase domain profile. 28 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g835 487 SMART serkin_6 28 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g835 487 ProSitePatterns Serine/Threonine protein kinases active-site signature. 152 164 IPR008271 GO:0004672|GO:0006468
Vvi17g835 487 Gene3D Transferase(Phosphotransferase) domain 1 111 293 - -
Vvi17g835 487 MobiDBLite consensus disorder prediction 291 329 - -
Vvi17g835 487 MobiDBLite consensus disorder prediction 310 328 - -
Vvi17g835 487 Gene3D - 339 419 - -
Vvi17g835 487 MobiDBLite consensus disorder prediction 1 21 - -
Vvi17g835 487 CDD STKc_WNK 26 286 - -
Vvi17g835 487 Gene3D Phosphorylase Kinase; domain 1 12 109 - -
Vvi17g835 487 SUPERFAMILY Protein kinase-like (PK-like) 30 319 IPR011009 -
Vvi17g835 487 MobiDBLite consensus disorder prediction 473 487 - -
Vvi17g835 487 PANTHER SERINE/THREONINE-PROTEIN KINASE-RELATED 7 482 - -
Vvi17g835 487 MobiDBLite consensus disorder prediction 462 487 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76334 PF00069 Pkinase 9.80E-51 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g835 K08867 - vvi:100250110 977.237