Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g847 ATGGCTACGCGTGCGTTTCTCTTGACTTCACTGCTTCTCTCTTGCTTGTTGCAGATTTGTTCTGGTGCCTATTTTTCATCTCTCCAACGAACTCTAATTGTCACAGCTTCACCCAAAGCTGGAGAAGTTCTAAAATCTGGAGAAGACAAAATCACTGTGACATGGGGTCTAAACCAGTCTTACCCAGCCGGGACAGACTCAGCCTACAAGACCGTGAAGGTCAAGCTCTGCTACGCGCCGATAAGCCAAGTGGACCGCGCCTGGAGAAAGACGGTGGACCACCTAACAAAAGACAAAACCTGCCAGCACAAGATTGTTTCACAGCCCTACAAAGCTTCCAACAATTCCGTAGAGTGGACTATAGAGAAAGACGTGCCGACAGCCACGTACTTCATACGCGCCTACGCGTATGACGCTGAGGATCAAGAGGTGGCATACGGACAAACCACAGACGCCCACAAGACCACTAATCTCTTTGGCATTGAAGCAATCACAGGCCGCCATGCATCCCTTGACATTGCTGCCGTTTGCTTCTCTGCTTTCTCAGTGGTTTCACTTTGCGGGTTCTTCTGGGTGGAGAAGAGAAAGAGTAGAGTGGCCAAGTAA 606 49.67 MATRAFLLTSLLLSCLLQICSGAYFSSLQRTLIVTASPKAGEVLKSGEDKITVTWGLNQSYPAGTDSAYKTVKVKLCYAPISQVDRAWRKTVDHLTKDKTCQHKIVSQPYKASNNSVEWTIEKDVPTATYFIRAYAYDAEDQEVAYGQTTDAHKTTNLFGIEAITGRHASLDIAAVCFSAFSVVSLCGFFWVEKRKSRVAK* 202
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 11135752 11137581 + Vvi17g847 Vvi17g847 779544

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g847 201 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 15 - -
Vvi17g847 201 PIRSF NAR2 1 201 IPR016605 GO:0010167|GO:0015706
Vvi17g847 201 Pfam High-affinity nitrate transporter accessory, Ig-like domain 25 166 IPR016605 GO:0010167|GO:0015706
Vvi17g847 201 PANTHER HIGH-AFFINITY NITRATE TRANSPORTER 3.2 1 199 IPR016605 GO:0010167|GO:0015706
Vvi17g847 201 PANTHER HIGH-AFFINITY NITRATE TRANSPORTER 3.2 1 199 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g847 - - - vvi:100258771 396.741
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g847 . . Bda06g00619 . . . . Bma12g01057 Cmo13g00790 Cmo18g00158 . . . . . Cpe20g00344 . . . . . . . . . . . . . . . Cone2ag0936 Cone16ag0067 . . Lsi02g00423 Csa01g00891 Chy12g01232 Cme12g01656 . Blo15g00248 Bda11g01646 . Bpe07g00861 . . . Sed01g1616 . . Cma13g00760 Cma18g00196 Car13g00612 Car18g00190 Cpe09g00997 . Bhi08g01669 Tan05g1955 Cmetu12g1893 Lac10g0499 Hepe07g2193 . . Cla03g00292 Cam03g0310 Cec03g0305 Cco03g0318 Clacu03g0311 Cmu03g0921 Cre03g0612 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004569 4 1 1 3 3 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 42