Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g854 ATGGATACGTGTTTCAGTAGCTTTCTGCTGCATATAAACCAAGGAATCCCAGAGCTTGCGATAGAAAGCACGCATTTAGGTACACACAAAAAGAAAATGGGAAGCTTTCTAGGTCTTCTGTACAAGGAAAACGACTCGTTCTTTCTGCTTCTTCTTCCCTTTTTCATCTTCACACACTTCCTCATTAAATGGCTATATCCTACTACTCCTGCAGTCACCACAAAAAAGTTACTTCCTTCCCCACCAAAGCTCCCAATCATTGGAAACCTCCACCAACTAGGCTCGCTCCCTCACCGTTCTCTCTGGGCCTTGGCTCAGCGCCATGGCCCCCTTATGCTGCTCCACTTTGGCAGGGTTCCAGTGGTCATCGTCTCAGCTGTAGACGCTGCAAGAGAGATCATGAAGACCAATGATGCCATCTTCTCAAATAGGCCTAAATCAAACATCTCGGCAAAGCTTCTCTATGATTACAAGGACGTTTCCACGGCCCCCTATGGAGAGTACTGGAGACAGATGAGGAGTATCTGTGTACTCCACCTTCTCAGCACCAGAAGGGTTCAGTCCTTCCGAGGTGTCCGAGAAGAAGAGACAGCCCTTCTGATGGAGAAGATCTCTTCCTCTTCTTCCTCCTCCATCCCAATTGATTTGAGCCAAATGTTTCTGTCCCTAACAAATGATCTCATATGCAGAGTTGCCCTAGGACGAAAATACATGGAGAAAGATTTTGTGGACGTTTTGCTTGGCATTCAGGAGGATAATGTCACAGGCGTTGCCATAACTGGAGTTTGCATCAAAGCTCTGACTCTGGACATGTTTGCTGCTGGAAGTGATACTACATACACGGTCCTAGAGTGGGCAATGACAGAGCTCTTGAGGCACCCACAAGTCATGAGGCAACTTCAGAATGAGGTCCGAGGAATTGCTCAAGGCAAACTCCTCATAACTGAAGATGACTTGGACAAAATGCAATATTTGAAGGCAGTGATCAAAGAGACTCTCAGACTATACCCTCCAATCCCACTACTAGTTCCCAGAGAATCCACCCGCGACGCCAAAATAATGGGCTACGACATTGCAGCACGGACACAAGTCATTACCAATGTATGGGCAATTGGGAGAGATCCACTGCTGTGGGATGAGGCCGAGGAGTTTCGGCCAGAAAGGTTCTTGAACTCTTCTATAGATTTCAGGGGGCAAGACTTTGAGTTGATCCCATTTGGATCTGGCCGGAGAGGTTGCCCGGGAACTCTGTTCGCGGCAATGGCAATTGAGGTTGTGTTAGCAAATCTTGTTCATCGGTTTGATTGGGAAGTGGGTGGTGGAGGTAGAAGGGAGGATTTGGATATGACTGAATGCACTGAATTTTTTTCTTCTGTTTTTATACCTAGAATAATAATAAATATTCTTTTAATTTGTGCTTTAATTTTATATTCTAAAATTATATTCAAAATGCTCTAA 1458 45.34 MDTCFSSFLLHINQGIPELAIESTHLGTHKKKMGSFLGLLYKENDSFFLLLLPFFIFTHFLIKWLYPTTPAVTTKKLLPSPPKLPIIGNLHQLGSLPHRSLWALAQRHGPLMLLHFGRVPVVIVSAVDAAREIMKTNDAIFSNRPKSNISAKLLYDYKDVSTAPYGEYWRQMRSICVLHLLSTRRVQSFRGVREEETALLMEKISSSSSSSIPIDLSQMFLSLTNDLICRVALGRKYMEKDFVDVLLGIQEDNVTGVAITGVCIKALTLDMFAAGSDTTYTVLEWAMTELLRHPQVMRQLQNEVRGIAQGKLLITEDDLDKMQYLKAVIKETLRLYPPIPLLVPRESTRDAKIMGYDIAARTQVITNVWAIGRDPLLWDEAEEFRPERFLNSSIDFRGQDFELIPFGSGRRGCPGTLFAAMAIEVVLANLVHRFDWEVGGGGRREDLDMTECTEFFSSVFIPRIIINILLICALILYSKIIFKML* 486
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 11202227 11204433 + Vvi17g854 Vvi17g854 779551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g854 485 PRINTS P450 superfamily signature 274 291 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi17g854 485 PRINTS P450 superfamily signature 327 338 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi17g854 485 PRINTS P450 superfamily signature 404 413 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi17g854 485 PRINTS P450 superfamily signature 413 424 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi17g854 485 Gene3D Cytochrome P450 239 458 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi17g854 485 PANTHER CYTOCHROME P450 71A21-RELATED 239 453 - -
Vvi17g854 485 PANTHER CYTOCHROME P450 71A21-RELATED 47 238 - -
Vvi17g854 485 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 406 415 IPR017972 GO:0005506|GO:0016705
Vvi17g854 485 PRINTS E-class P450 group I signature 105 124 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi17g854 485 PRINTS E-class P450 group I signature 326 344 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi17g854 485 PRINTS E-class P450 group I signature 367 391 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi17g854 485 PRINTS E-class P450 group I signature 403 413 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi17g854 485 PRINTS E-class P450 group I signature 413 436 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi17g854 485 Gene3D Cytochrome P450 72 238 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi17g854 485 Pfam Cytochrome P450 239 449 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi17g854 485 Pfam Cytochrome P450 79 237 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi17g854 485 SUPERFAMILY Cytochrome P450 79 456 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi17g854 485 PANTHER CYTOCHROME P450 71B11-RELATED 47 238 - -
Vvi17g854 485 PANTHER CYTOCHROME P450 71B11-RELATED 239 453 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g854 - - gsj:114368383 429.483