Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g860 ATGGAAGCTCTGGGACTACCACCTCTCAGTACTCTCAGCGTTTCGCGTTGCAGAGCAGGAGTATTGGGAAGAACATGTTATAGCAATTTCTCAGTGCCATCTTCCCTCAAACTCAGTACAACTCACCACAAAAGGCACGGTATTGTTCGAATGCAAGCTTATGAAGAAGAGTACGAGCTGAAGCAAATGAAGGACATGGCTGCAGCCAGAAAGAGATGGGAAGCTCTGATCAGGGAAGAAAAAGTTAAAATTCTTTCCCCGAGGGAAGCTGGATATGCAATTCAACTCTCTAACAAGACTTTACTTGACGTTCGCCCCTCTACAGAACGCAAAAAGGCATGGGTGAAGGGCTCAACATGGATTCCAATTTTTGAAGTTGATGATAGATTTGATGTCGGAACTCTTTCTAGAAAGATCACAAATTTCATGATGGGAGGATGGTGGAGTGGTGTTCCTGCATTATCATATGATAGCCAGTTTTTGACCAAGGTTGAGCAGAAATTCCCAAAGGATACAGACCTTATTGTTGCATGCCAGAAGGGATTGAGATCTCTTGCTGCTTGTGAGCTACTGTACAATGCTGGCTATAGCAACCTTTTTTGGGTTCAAGGAGGCCTGGAGGCTGCTGAAGAAGAGGATCTTGTAAGGGAAGGTCCAGAGCCATTTAAATTGGCTGGAATTGGTGGACTCTCAGAATTTCTTGGTTGGACTGATCAACAAAGAGTTGCAGCCACCAAAGAAGGTTGGGGTTACCGATTGGTTTTCTCTGCCCGTCTGGTGGGAGTCTTTCTTGTTGCTGATGCTTTGTTTATTGGGGCTCAGCAACTGGGTCGCTATCTTCAAGATATTAGGTCACACTGA 861 45.06 MEALGLPPLSTLSVSRCRAGVLGRTCYSNFSVPSSLKLSTTHHKRHGIVRMQAYEEEYELKQMKDMAAARKRWEALIREEKVKILSPREAGYAIQLSNKTLLDVRPSTERKKAWVKGSTWIPIFEVDDRFDVGTLSRKITNFMMGGWWSGVPALSYDSQFLTKVEQKFPKDTDLIVACQKGLRSLAACELLYNAGYSNLFWVQGGLEAAEEEDLVREGPEPFKLAGIGGLSEFLGWTDQQRVAATKEGWGYRLVFSARLVGVFLVADALFIGAQQLGRYLQDIRSH* 287
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 11352416 11359966 - Vvi17g860 Vvi17g860 779557

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g860 286 ProSiteProfiles Rhodanese domain profile. 95 218 IPR001763 -
Vvi17g860 286 SMART rhod_4 85 215 IPR001763 -
Vvi17g860 286 Pfam Rhodanese-like domain 97 208 IPR001763 -
Vvi17g860 286 PANTHER RHODANESE-LIKE DOMAIN-CONTAINING PROTEIN 11, CHLOROPLASTIC 1 285 IPR044664 -
Vvi17g860 286 Gene3D - 82 251 IPR036873 -
Vvi17g860 286 CDD RHOD 100 208 - -
Vvi17g860 286 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 72 209 IPR036873 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g860 - - - vvi:100243259 578.17
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g860 . . Bda06g00622 . . . . Bma12g01059 . . Cma10g00088 . Car10g00078 . . . . Bhi02g00594 . . . . . . Cla06g01706 Cam06g1894 Cec06g1943 Cco06g1947 Clacu06g1850 Cmu06g1791 Cre06g2606 . Cone16ag0063 . . . . . . . . . . . . . . . Cmo10g00089 . . . . . . Cpe18g00873 . . . . . . . . . . . . . . Lsi06g01599 Csa01g00099 Chy02g02624 Cme02g02022
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi19g1124 . 59 381 Sulfurtransferasese/Rhodanese AT1G79230 78.6 2.5e-153 538.5
Vvi19g1124 . 59 323 Sulfurtransferasese/Rhodanese AT1G16460 74.0 1.7e-115 412.5
Vvi17g389 . 605 884 Sulfurtransferasese/Rhodanese AT5G23060 68.4 2.8e-96 349.0
Vvi15g742 . 1 329 Sulfurtransferasese/Rhodanese AT4G01050 57.9 3.4e-104 375.9
Vvi14g82 . 8 614 Sulfurtransferasese/Rhodanese AT1G09280 66.8 2.5e-236 815.1
Vvi13g182 . 97 446 Sulfurtransferasese/Rhodanese AT2G40760 74.0 5.8e-154 541.2
Vvi17g979 . 11 335 Sulfurtransferasese/Rhodanese AT1G17850 68.5 2.1e-137 486.1
Vvi8g1244 . 1 227 Sulfurtransferasese/Rhodanese AT2G42220 69.9 4.6e-88 321.2
Vvi8g246 . 37 218 Sulfurtransferasese/Rhodanese AT3G08920 67.0 1.2e-71 266.5
Vvi17g860 . 1 287 Sulfurtransferasese/Rhodanese AT4G24750 66.6 1.2e-109 393.3
Vvi6g993 . 17 297 Sulfurtransferasese/Rhodanese AT5G19370 59.6 2.4e-89 325.9
Vvi19g557 . 48 398 Sulfurtransferasese/Rhodanese AT5G55130 73.7 2.2e-153 538.9
Vvi16g997 . 50 228 Sulfurtransferasese/Rhodanese AT4G27700 81.0 1.5e-80 296.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011200 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31