Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g861 ATGATAGAATATTCATATGCAAAAGTTAAAAGATTCCTCTACAATAACAACAACTTAACAAGAAAAGACAATAAGAATCTAAAACAATCCAACCAAAGCATGGGCATCTCCTCCTTCCAGGCTTCTCATTCCATGGTTTCTCAGTCTCTCTTGTTGCTCTTGTTGGTAATTTTTTCTGCTCTTTTGTTGTTCCTTCTGTCGACCAAGCAGAAGAGGAAGAGTGTAGCATCAAGAAGACTACCGCCGGGTCCTAAGAAGCTACCATTAATCGGGAACCTTCACCAACTCGGCAGCTTACCTCATGTAGGCCTACAACGCCTTTCAAATGAATATGGGCCGCTCATGTACCTGAAACTAGGCTCAGTTCCAACTCTAGTAGTCTCATCAGCTGATATGGCTAGAGAGATTTTCAGAGAGCATGATCTTGTTTTTTCTAGCAGACCTGCGCCATATGCTGGGAAGAAGCTGAAGAAGAACTTCTTGGAACTGGACAAGATCTATGACAAAGTAATAGAGGAGCACCTTGATCCAGAAAGGCCTGAACCTGAGCATGAAGATCTTGTTGATGTACTGATTCGAGTTCAGAAGGATCCAAAAAGGGCTGTAGATCTCAGTATTGAAAAAATCAAGGGTGTTCTCACGGACATGTTCATTGCAGGGACTGATACCTCTTCAGCCTCACTGGTATGGACAATGGCTGAGCTGATTAGAAATCCTTCTGTGATGAGAAAAGCACAAGAAGAGGTGAGGAGCGCTGTCAGAGGAAAATATCAGGTGGAAGAAAGTGATCTTTCGCAACTCATCTACCTAAAGTTGGTGGTAAAAGAGTCACTGAGACTTCATCCACCAGCCCCATTACTAGTTCCTCGAAAAACCAACGAGGACTGCACGATTAGAGGGTATGAAGTTCCAGCAAATACACAAGTGTTCGTGAATGGAAAATCGATAGCAACTGACCCAAATTATTGGGAAAATCCAAATGAATTTCAACCTGAAAGATTTTTGGATAGCGCCATTGATTTCAGAGGACAAAACTTCGAGCTTTTACCATTTGGCGCTGGCAGGAGAGGGTGTCCTGCGGTTAACTTTGCCGTCCTGTTGATCGAACTTGCGCTCGCAAACTTGCTGCATCGTTTTGACTGGGAACTGGCTGATGGGATGAGAAGAGAAGATTTGGATATGGAAGAAGCAATTGGCATAACAGTGCACAAAAAAAATCCTCTCTACCTTCTAGCTACCCCTGCTAATTGA 1251 43.25 MIEYSYAKVKRFLYNNNNLTRKDNKNLKQSNQSMGISSFQASHSMVSQSLLLLLLVIFSALLLFLLSTKQKRKSVASRRLPPGPKKLPLIGNLHQLGSLPHVGLQRLSNEYGPLMYLKLGSVPTLVVSSADMAREIFREHDLVFSSRPAPYAGKKLKKNFLELDKIYDKVIEEHLDPERPEPEHEDLVDVLIRVQKDPKRAVDLSIEKIKGVLTDMFIAGTDTSSASLVWTMAELIRNPSVMRKAQEEVRSAVRGKYQVEESDLSQLIYLKLVVKESLRLHPPAPLLVPRKTNEDCTIRGYEVPANTQVFVNGKSIATDPNYWENPNEFQPERFLDSAIDFRGQNFELLPFGAGRRGCPAVNFAVLLIELALANLLHRFDWELADGMRREDLDMEEAIGITVHKKNPLYLLATPAN* 417
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 11371145 11380581 + Vvi17g861 Vvi17g861 779558

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g861 416 SUPERFAMILY Cytochrome P450 77 414 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi17g861 416 Pfam Cytochrome P450 154 407 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi17g861 416 Pfam Cytochrome P450 81 155 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi17g861 416 Gene3D Cytochrome P450 154 410 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi17g861 416 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 351 360 IPR017972 GO:0005506|GO:0016705
Vvi17g861 416 PRINTS E-class P450 group IV signature 210 236 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi17g861 416 PRINTS E-class P450 group IV signature 317 335 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi17g861 416 PRINTS E-class P450 group IV signature 267 283 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi17g861 416 PRINTS E-class P450 group IV signature 342 358 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi17g861 416 PRINTS E-class P450 group IV signature 358 376 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi17g861 416 PANTHER CYTOCHROME P450 71A9 154 414 - -
Vvi17g861 416 PANTHER CYTOCHROME P450 71A9 53 156 - -
Vvi17g861 416 PANTHER OS08G0105600 PROTEIN 154 414 - -
Vvi17g861 416 PANTHER OS08G0105600 PROTEIN 53 156 - -
Vvi17g861 416 Gene3D Cytochrome P450 64 153 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi17g861 416 PRINTS P450 superfamily signature 219 236 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi17g861 416 PRINTS P450 superfamily signature 349 358 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi17g861 416 PRINTS P450 superfamily signature 272 283 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g861 K20617 CYP71A; cytochrome P450 family 71 subfamily A - vvi:100248387 519.235
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g861 . . Bda06g00623 Bda15g00532 . . . Bma12g01061 . Cmo18g00175 . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0183 . Lsi02g00436 Csa01g00909 Chy12g01217 Cme12g01643 Blo13g00154 Blo15g00245 . . . . . . . . . . . . . . . Bhi08g01683 . . . Hepe07g2179 . . Cla03g00302 . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000114 2 12 3 1 0 7 0 7 6 6 11 9 15 7 3 22 9 4 0 10 11 2 0 8 13 10 6 17 8 7 216