Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g866 ATGTCGTCTGCAACTCACCATCTCTTGAAGCCCTTCTCAATCCCAAATGGGTCTCCAATCTCTCTTCCCACCATCTTCTCCACCAAAACCCCACATTCATATCTGCCAATTCCTCCTCACAAACCCATTAAGCTTCTCTTATCATGCTCTCAATCTTCACTCTTTTCCCCATCTTTGTTTCTTAAGAGCAAGACCCTTTCTTCTTCTGTAGTCACCTTCGTTGCCCAGACCTCGGACTGGGCTCAGCAGGAAGAAGACAACACAGTGATAATTGAAGAAGAGCAGGAAGAGAAGGTCACTTGGGAAAATGAAGAGGCCATCAGCGACGACGGAGTCGTTGATGATGGTGAGGATTCTTATTCGGAACCGCCTGAGGAGGCAAAGGTTTTTGTCGGCAATTTGCCATATGACGTTGATAGTGAGAGGCTGGCTAGGCTTTTTGAGCAGGCTGGGGTTGTGGAGATCGCAGAGGTTATTTACAATAGGGAGACTGATAGAAGTCGTGGGTTCGGGTTTGTGTCAATGAGTACTGTTGAAGAAGCCGAAAAGGCTGTGGATATGTTTCATCGTTATGAATTAGATGGAAGGCTCTTGACTGTAAACAAGGCTGCTCCACGAGGATCACAGCCAGAACGCCCCCCTCGCGTGTTTGAACCTGCTTTTAGAATGTATGTTGGTAACCTGCCATGGGATGTCGACAGTGCTCGTCTGGAGCAGGTTTTCAGTGAACATGGTAAGGTTGTGGAGGCTCGTGTGGTTTTCGACAGAGAGACTGGTCGTTCCCGTGGTTTTGGCTTCGTGACAATGTCTAGCCAAACTGAATTGGAAGATGCCATTGCAGCCACCGATGGACAGACTCTGGATGGGAGAACGATCAGAGTAAATGTAGCTGAGGAAAGACCCAGGCGCAGTGCCTTCTGA 921 48.43 MSSATHHLLKPFSIPNGSPISLPTIFSTKTPHSYLPIPPHKPIKLLLSCSQSSLFSPSLFLKSKTLSSSVVTFVAQTSDWAQQEEDNTVIIEEEQEEKVTWENEEAISDDGVVDDGEDSYSEPPEEAKVFVGNLPYDVDSERLARLFEQAGVVEIAEVIYNRETDRSRGFGFVSMSTVEEAEKAVDMFHRYELDGRLLTVNKAAPRGSQPERPPRVFEPAFRMYVGNLPWDVDSARLEQVFSEHGKVVEARVVFDRETGRSRGFGFVTMSSQTELEDAIAATDGQTLDGRTIRVNVAEERPRRSAF* 307
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 11462813 11466176 + Vvi17g866 Vvi17g866 779563

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g866 306 CDD RRM_HP0827_like 222 298 - -
Vvi17g866 306 SMART rrm1_1 128 201 IPR000504 GO:0003723
Vvi17g866 306 SMART rrm1_1 222 295 IPR000504 GO:0003723
Vvi17g866 306 PANTHER OS02G0815200 PROTEIN 1 97 - -
Vvi17g866 306 PANTHER OS02G0815200 PROTEIN 109 306 - -
Vvi17g866 306 PANTHER RIBONUCLEOPROTEIN 109 306 - -
Vvi17g866 306 PANTHER RIBONUCLEOPROTEIN 1 97 - -
Vvi17g866 306 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 224 293 IPR000504 GO:0003723
Vvi17g866 306 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 129 198 IPR000504 GO:0003723
Vvi17g866 306 SUPERFAMILY RNA-binding domain, RBD 122 215 IPR035979 GO:0003676
Vvi17g866 306 MobiDBLite consensus disorder prediction 107 121 - -
Vvi17g866 306 SUPERFAMILY RNA-binding domain, RBD 213 304 IPR035979 GO:0003676
Vvi17g866 306 Gene3D - 73 211 IPR012677 -
Vvi17g866 306 Gene3D - 212 306 IPR012677 -
Vvi17g866 306 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 127 205 IPR000504 GO:0003723
Vvi17g866 306 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 221 299 IPR000504 GO:0003723
Vvi17g866 306 CDD RRM_HP0827_like 128 205 - -
Vvi17g866 306 MobiDBLite consensus disorder prediction 104 124 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g866 - - - vvi:100257045 540.421
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi14g1265 Vvi17g866 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g866 . . Bda06g00624 . Bpe12g00685 . . Bma12g01062 . . Cma10g00083 Cma11g00062 Car10g00075 Car11g00056 Sed08g0071 . Cpe04g01590 Bhi02g00588 Tan09g2319 Cmetu02g0952 . Hepe09g0089 . . Cla06g01709 Cam06g1898 Cec06g1947 Cco06g1951 Clacu06g1854 Cmu06g1795 Cre06g2610 . . Cone13ag0188 . . . . . Blo13g00155 Blo15g00244 . . Bpe07g00865 . . . . Cmo10g00085 Cmo11g00064 . . . . . Cpe18g00878 . . . . . . . . . . . . . . Lsi06g01603 Csa01g00094 Chy02g02627 Cme02g02026
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008467 1 1 2 1 1 1 2 1 1 0 0 1 1 1 1 2 1 3 2 1 1 1 1 1 1 1 0 2 1 2 35